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Hi, I'm really amazed with the run_TetGen() function. It works great when I have two STL networks with one inside the other, but whenever one object intersects another, the volume cannot be meshed be…
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### Title
Improving surface functionality in Nilearn
### Short description and the goals for the OHBM BrainHack
## INTRODUCTION
Nilearn is an open-source Python package for fast and easy a…
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First of all, I played around with Emscripten several weeks ago and although I had success getting other things to work, I didn't manage to get far with Chocolate Doom. That said, I do believe that an…
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Dear Dmitri,
I used the following command to perform the surface-based tracking for short association fibres.
> [SD, PS] = SAF_pipeline('fs_dir', fs_dir, 'fod', fod,'noregister', 'tckgen', '-cut…
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in the mindboggle output none of the global measures/stats evaluated by the underlying tools are extracted. while it's possible to go back and extract them separately, it would nice to have them in th…
satra updated
5 years ago
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Hello,
I have completed the resting-state fMRI preprocessing based on fmriprep 20.1.1. When I checked the results in den-91k space (i.e., files named ...fsLR_den-91k_bold.dtseries.nii), I found there…
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as of 0.4a57
sample code:
```python
import siibra
p = siibra.parcellations["julich brain 2.9"]
type(p.get_map("fsaverage", "labelled").fetch()) # returns
type(p.get_map("mni152", "labelle…
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# Animal /Nonstandard Brain Pipelines
## Project Description
This is an example of converting an in house animal pipeline project to hopefully a feat or c-pac for animal studies. In Neuroimagin…
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Documentation and best-practices for creating multi-layer BEMs for source localisation
- software (freesurfer, simnibs, brainstorm,...)
- running on cluster
- checking/visualisation
@MadsJensen @sara…
cjayb updated
8 years ago