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Hi,
does PairedSCGLUEModel work in a way that it finds common `.obs_names` among all present modalities? Or is it also possible to use the paired model when e.g. integrating 3 modalities and where …
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Hi authors,
Thanks for your interesting work.
I have some issues. Your paper cites the TimesNet paper results as a direct comparison but your setting is inconsistent with the setting of TimesNe…
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I'm starting to regularly analyze samples multiplexed with HTOs a la [Stoeckius et al](https://www.biorxiv.org/content/early/2017/12/21/237693) and multimodal CITE-seq ADTs. I have some rough ports o…
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Two attributes (cDNA Length and cDNA Offset) that were accidentally included in this initial version of the template. These are optional attributes and can be ignored by users currently, but we should…
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Your work is very useful to single-cell multiomics anlaysis. I have tried your model to run in Google colab L4 GPU with the example BMNC CITE-seq dataset. I have completely run the model for 3 times …
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Dear Dr. Satija
"If uploading a Seurat object, it must contain an assay named ‘RNA’ with raw data in the ‘counts’ slot. Note that Azimuth uses only the (unnormalized) counts matrix."
Could you p…
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## Release date
The paper has not been published, for now the expected date for the release is January 2023
### Project short name: YolkSacMultiOrganFunctions
### Primary Wrangler: Ida
### Secon…
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Hi guys, I think it is great that a variation of the Persist-seq pseudo-bulk workflow was merged, it took me quite a long time (nearly a year - and still is being improved) to develop it and test it, …
pcm32 updated
2 weeks ago
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I frequently work with single-cell multi-omics data (mostly scRNA-seq + CITE-seq, but scATAC-seq is also expected), and it is known that different modalities for the same samples requires separate seq…
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Hello,
Thanks for making this tool. I have a quick question about the parameters involving cells.
User can input the number of cells expected in the run, and/or also input the list of cell barcod…