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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
>>> import sys; print(sys.version)
3.7.16 (default, Jan 17 2023, 22:20:44…
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We will typically just need to get clade assignments (and summarize to counts of clade assignments) for samples that were collected within a particular date range. We should be able to specify those …
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I posted this on biostars but I am not sure if it is a feature request or it is already possible. In ggtree you can add images to tips as such:
library(ape)
tree
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Hello,
Is there a way to increase/change the size of the bubbles in the "Taxonomic clade" legend?
Thanks!
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On the tree, if a node is collapsed or an internal node is hovered, show the size of the clade.
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@marlinfiggins, this relates to our discussion of generating predictors for the model.
I propose to write a notebook that will collate various predictors. I propose it will output two files.
The…
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Hi @aineniamh
Could you also commit the clade defining SNPs output (defining_snps.csv) ? That will be helpful to see how each clade is defined at the sequence level. Besides regenerating from the a…
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Tautonyms such as **Gorilla_gorilla** raise an error when used in clade constraints for unrooted trees.
Here is an example of how I set up my topological constraints.
```
cladeA=("Gorilla_gorilla…
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### Author(s) of proposal
Chris Hoess
### Name of taxon
Adiantoideae
### Rank of taxon
Subfamily
### Approximate number of species affected
c. 250
### Description of change
The subfamily Adia…
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Currently, there is a single field for the author names. Would it be better to have separate ones for given and family names for up to x authors? Phil suggests three author fields with an option to …