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Hi,
I am using standalone version of PepQuery for protein identification. After trypsin digestion, PepQuery identified below peptides as unique. However, it seems like trypsin digestion with Pepqu…
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How are protein-stemmed glyphs to be used in conjunction with CDS/CDS domain glyphs?
Should CDS glyphs be required to represent the full start->stop codon open reading frame?
The polypeptide-stemm…
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# AllClo
### Unification, harmonizations and validations of high fidelity MoClo genetic assembly standard expansions
Our objective is to create a standard expansion unifying all the previous ones …
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Hi! We are using XTandemAdapter in our pipeline and we got an error with the message below. Seems like `PeptideIndexer` failed to match some peptides matched by X!Tandem.
```
Aho-Corasick done:
…
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Workflow
The search engine definitely plays the most important role in the peptide identification process. As illustrated below, what the search engine itself does is bascically first in silico diges…
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### Contribution guidelines
- [X] I've read the [contribution guidelines](https://github.com/squidfunk/mkdocs-material/blob/master/CONTRIBUTING.md) and wholeheartedly agree
### I've found a bug and …
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Use this thread to discuss potential figures. I think we need about one figure per section depicting the key concept from that section.
@Arokiarex is drafting a figure for the quantitative strateg…
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I noticed that kazu changed the input text. I'm curious how it made this mistake and how to prevent it.
To recreate: I passed in a text block that contained the text "The CFIm25 deletion leads …
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# Structure:
## Introduction
### Statement of the purpose
### Significance of the study
### Scope of the study
### Review of related literature
## Methods
## Results
## Discussion
#…
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Hello,
I am getting the following error on the visualization.py script, can you please advice, what may be the reason for this following error:
I clone the repository by running git clone --recur…