issues
search
tsailabSJ
/
circleseq
GNU Affero General Public License v3.0
22
stars
19
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
I cannot pip install because version of HTSeq
#44
PavitaKae
closed
1 year ago
3
samtools can't find the input file even the file exitsts
#43
liyongzheng1
closed
3 years ago
0
nosetests failed
#42
weihongqi
opened
4 years ago
0
depreciated load function in circleseq.py
#41
Bicoid
opened
4 years ago
0
Documentation describing output columns
#40
leonieroos
opened
5 years ago
1
what is control read?
#39
woojeung
opened
5 years ago
0
No sufficient documentation
#38
kevinblighe
closed
4 years ago
1
Error visualizing off-target sites
#37
Dharmendra-G-1
opened
6 years ago
5
Visualization aborts if no off-targets found
#36
shengdar
opened
6 years ago
1
AttributeError: 'module' object has no attribute 'distributions'
#35
sarmitobagus
closed
6 years ago
0
Realignment updates, variant calling, search window parameter and misc other minor edits
#34
martinaryee
closed
6 years ago
0
Dev
#33
martinaryee
closed
6 years ago
1
Realignment updates, variant calling, search window parameter and misc other edits
#32
martinaryee
closed
6 years ago
0
Misc pipeline updates
#31
martinaryee
closed
6 years ago
0
Non-writable output folder triggers non-obvious manifest validation error
#30
shengdar
opened
6 years ago
0
Coverage visualization
#29
shengdar
opened
7 years ago
0
Allow manifest parameter to support different read lengths
#28
shengdar
opened
7 years ago
1
Document analysis parameters in output file
#27
shengdar
opened
7 years ago
0
Update manifest to support parallelization via LSF
#26
shengdar
opened
7 years ago
0
Zero division error
#25
AishaAJ
closed
6 years ago
3
Support for non-human genomes
#24
shengdar
closed
6 years ago
1
test run failed
#23
calvinhuapeng
closed
7 years ago
0
chromosome name prefix
#22
XingTang2014
closed
6 years ago
0
Target site retrieval
#21
shengdar
opened
8 years ago
0
Fix coordinates mapping position
#20
shengdar
closed
8 years ago
0
Change visualization color for indels to grey
#19
shengdar
closed
8 years ago
0
Current p-value filter may result in multiple windows
#18
shengdar
closed
8 years ago
1
Coordinates may be off by 1bp
#17
shengdar
closed
8 years ago
1
Move code to sort and output alignments into its own method
#16
shengdar
closed
8 years ago
0
Fix visualization.py to support insertions
#15
shengdar
closed
8 years ago
1
Scale read counts for p-value estimation, based on run read count
#14
shengdar
closed
8 years ago
0
Calculate distance metric
#13
shengdar
opened
8 years ago
0
Report p-values for unmatched sites
#12
shengdar
opened
8 years ago
0
Get "narrow-window" read counts into final output tables
#11
shengdar
closed
8 years ago
0
Length of off-target sequence is less than 23 in few cases
#10
josemalo
closed
8 years ago
1
Integrate visualization
#9
shengdar
closed
8 years ago
0
Create test dataset
#8
shengdar
closed
6 years ago
0
Implement SNP calling from sequencing data for off-target sites
#7
shengdar
opened
8 years ago
0
Implement reference-independent discovery algorithm
#6
shengdar
closed
8 years ago
0
Enable gapped alignment
#5
shengdar
closed
8 years ago
0
Integrate off-target visualization
#4
shengdar
closed
8 years ago
0
Deduplicate identified sites
#3
shengdar
closed
8 years ago
0
Enable LSF support for parallelization of CIRCLE-seq analysis
#2
shengdar
closed
8 years ago
2
Mismatch count needs to be fixed
#1
shengdar
closed
8 years ago
0