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I want to download all the clinical data from the rnaseq data selected:
```
expands = c("diagnoses","annotations",
"demographic","exposures")
clinResults = cases() %>%
Genomic…
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Determined that `DATA-CA` program was mainly for clinical. Uploaded molecular data was to help visualization on dashboard.
A more comprehensive set is needed for workflow testing.
- [x] Make `Seq-…
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**Is your feature request related to a problem? Please describe.**
Yes, administrative non-clinical workflows are a huge opportunity to leverage AI.
**Describe the solution you'd like**
MAPs th…
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Discussion topic raised on 2/20 CVI call.
>attaching a phenotype or disease code up front may be misleading.
Point was raised that care needs to be taken to ensure that the value of [the relevance…
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### What feature or change would you like to see made?
- Implement support for rendering and displaying presentation states within the OHIF viewer
- Introduce functionality to set display areas an…
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Hi!
When I try to add a list of cont_labels to marugoto.mil crossval, the program breaks.
```
python -m marugoto.mil crossval \
--clini-excel $cliniPath \
--slide-csv $slidePath \
…
tsorz updated
3 months ago
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query_samples = (GDCquery(project = c("TCGA-PRAD"),
data.category = "Transcriptome Profiling",
data.type = "Gene Expression Quantification",
…
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Per email from Jim:
I have wrapped up a draft of the clinical workflow, but in doing so I realized that there is one additional display that would be great to be able to have when we launch: a graph …
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Describe usecase & scope in IG.
Also mention what is not in scope - for example handling the clinical workflow.
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### Need
MSI analysis was requested to be included to the workflow in https://github.com/Clinical-Genomics/BALSAMIC/issues/972
### Suggested approach
Add [MSIsensor-pro](https://github.com/x…