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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# manual annotations remapping
- [ ] request whole-genome alignment
- […
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Hi,
to get singularity to run, I've had to go into almost all cwl scripts and put "#!/usr/bin/env -S cwltool --singularity" at the top.
Now, I STILL get a problem where it's trying to call Docke…
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We could provide a visual rendering of process Application Package and workflows using these tools.
Directly with `cwltool`!
https://github.com/common-workflow-language/cwltool/commit/cbc33f3ee9…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back u…
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https://www.commonwl.org
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We are looking into ways to integrate EO Application packages (CWL) into openEO.
Our latest ideas are formulated here: https://github.com/Open-EO/openeo-processes/issues/507#issuecomment-2236310553
…
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## Expected Behavior
When executing a yaml file with `cwltool --cachedir CACHE WORKFLOW.cwl` the input file with
```
cwl:tool: ../../workflows/workflow_ngtax.cwl
for_read_len: 100
forward_pr…
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From a user POV, we want to present a compute-on-demand like a download-on-demand, and wrap everything into a git-annex special remote. This means that we are bound to that protocol, which translates …
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back …
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Is there a plan to support parsing of local cwl workflows? I ask because I need to keep certain workflows in private repos and this would be an obvious workaround.