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yyoshiaki
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VIRTUS2
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
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system disk and tmp directory
#41
antoine4ucsd
opened
1 month ago
2
Unable to open docker instance with Singularity
#40
SomeGuy3865
opened
1 month ago
1
Memory Issue
#39
SomeGuy3865
opened
2 months ago
1
Extracted reads dont match on blast (nr)
#38
sirrgang
closed
1 month ago
1
Strange samview fatal error in some samples
#37
xapple
closed
1 month ago
3
Thousands of weird warnings in the output of VIRTUS2
#36
xapple
closed
5 months ago
1
poor support for Singularity
#35
gailrosen
opened
8 months ago
7
question about singularity issue
#34
gailrosen
closed
8 months ago
1
Changing the viral database
#33
xapple
closed
8 months ago
2
Questions regarding VIRTUS2 script for transcript alignment to viral reference genome + calculating num_reads
#32
ppark123
closed
8 months ago
2
About summary.csv
#31
nmotisk
closed
9 months ago
2
Meaning of output data
#30
nmotisk
closed
10 months ago
0
about nthreads
#29
nmotisk
closed
10 months ago
1
V2.0.2
#28
yyoshiaki
closed
11 months ago
0
Individual viral gene output?
#27
SomeGuy3865
closed
11 months ago
1
Wrapper problem/maybe fix?
#26
SomeGuy3865
opened
12 months ago
5
Running this on an hpc with no docker installed
#25
SomeGuy3865
closed
1 year ago
5
Query is marked as paired, but its mate does not occur next to it in your BAM file. Skipping.
#24
ppark123
closed
1 year ago
1
Question about VIRTUS2 Output
#23
ppark123
opened
1 year ago
5
AttributeError: '_LocIndexer' object has no attribute 'columns'
#22
patrick-douglas
opened
1 year ago
6
Question about indexing genomes while using singularity
#21
egnst
closed
1 year ago
4
About errors that occur with docker
#20
inagaki-s
opened
1 year ago
2
How can I run createindex using a local custom local virus database?
#19
yyoshiaki
closed
1 year ago
5
Gene counts
#18
lukewgarratt
closed
1 year ago
2
Warnings: may be incompatible
#17
patrick-douglas
closed
1 year ago
3
Regarding the fact that what used to be supported by the system now produces errors
#16
inagaki-s
opened
1 year ago
1
Designation of output directory
#15
inagaki-s
closed
1 year ago
0
createindex
#14
inagaki-s
closed
1 year ago
2
IGV
#13
km-2021
closed
1 year ago
1
--limitBAMsortRAM
#12
a-zoon
closed
1 year ago
5
Incompatibility between cwltools and singularity for virtus2
#11
bioinfo-fiend
closed
1 year ago
11
Update cwltool version to match singularity/3.10.3
#10
qiyubio
closed
1 year ago
7
VIRTUS2 for scRNA
#9
andreanuzzo
closed
1 year ago
6
Adding STAR options for run
#8
cd-scientist
closed
1 year ago
1
Absolute path
#7
km-2021
closed
2 years ago
4
V2.0.1
#6
yyoshiaki
closed
2 years ago
0
No module named 'seaborn.external.six'
#5
km-2021
closed
2 years ago
6
bam_filter_polyx image dupulication
#4
yyoshiaki
closed
2 years ago
1
seaborn 0.12.0a deprecate seaborn.external.six
#3
yyoshiaki
closed
2 years ago
2
How to confirm the mapped read sequence?
#2
km-2021
closed
2 years ago
1
Errors occur when only few viruses were detected. (VIRTUS_wrapper.py)
#1
yyoshiaki
closed
2 years ago
1