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We are planning to apply to a [CZI Essential OSS Cycle 3](https://chanzuckerberg.com/rfa/essential-open-source-software-for-science/) via NumFOCUS. This issue is meant as a discussion tool with the c…
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**In Short**
Zeiss Scanners produce multi-scene images and while BioFormats can read these files, they cannot be viewed together in a 'Whole Slide' view which is acceptable to pathologists. Attempts…
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We also have a second, but separate question. We typically save our data as TIFFs and then convert to the BigDataViewer (BDV) H5 format, using [npy2bdv](https://github.com/nvladimus/npy2bdv). Since we…
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Issue was raised on forum thread https://forum.image.sc/t/some-channel-names-not-importing-from-czi-files/69243/2
A sample image has been provided which reproduces the issue using Bio-Formats 6.10.0
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Recent teaching experiences showed that handling such "monster activities" (https://neubias.github.io/training-resources/image_file_formats/index.html#open) can be challenging for trainers, students a…
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Hi all
As many of you might be aware a few folks and I are working on a CZI EOSS proposal to tackle accessibility issues in the Jupyter ecosystem.
In the proposal we have to provide informatio…
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Hi,
I realised a pretty significant bug in the Zeiss Lightsheet CZI reader. It does read the sizes of the individual stacks wrongly (assumes the biggest stack size for all of them), which is a huge p…
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I frequently import .czi files generated by ZenBlue v2.3, and I had no trouble until recently when I updated fiji. The old version- ImageJ 1.51u- still works fine, but ImageJ 1.52b just opens up the b…
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Hi @BioFormats,
Just a small enhancement request. Could you add GaAsP-PMT' to the DetectorType list? The relevent error is below.
WARN l.enums.handlers.DetectorTypeEnumHandler - Unknown Detec…
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Please take a moment to update the [Post PST A11y Audit](https://github.com/orgs/Quansight-Labs/projects/11/views/7) project board.
Then please provide your updates using the following template. (Y…