NEUBIAS training-resources issues

NEUBIAS / training-resources

Resources for teaching/preparing to teach bioimage analysis

https://neubias.github.io/training-resources

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Ome zarr

#732 bugraoezdemir opened 9 hours ago
0
Activity: Open OME-TIFF in python

#731 tischi opened 9 hours ago
0
Inspect OME-TIFF metadata

#730 tischi opened 9 hours ago
0
Activity: Save numpy array as OME-TIFF

#729 tischi opened 9 hours ago
0
Update the ome_zarr channel

#728 bugraoezdemir closed 4 days ago
3
Update the ome-zarr channel

#727 bugraoezdemir closed 4 days ago
0
Add BigVolumeViewer to 3D rendering module

#726 tischi opened 1 week ago
0
Viewing OME-Zarr in python ecosystem

#725 tischi opened 2 weeks ago
0
Activity for viewing OME-Zarr in Java ecosystem

#724 tischi opened 2 weeks ago
1
Python activity to create OME-Zarr from a numpy array

#723 tischi opened 2 weeks ago
0
Read chunked and multi-resolution OME-TIFF

#722 tischi opened 2 weeks ago
0
Improve OME-Zarr module

#721 tischi opened 2 weeks ago
0
Image data formats: refactor into one activity per format

#720 tischi opened 4 weeks ago
27
Image data formats: Saving in various formats

#719 tischi opened 4 weeks ago
3
Add AKA to modules

#718 tischi opened 1 month ago
1
Add VSI file to image_data

#717 tischi opened 1 month ago
0
For loops: Simplify?

#716 tischi closed 1 week ago
10
URL with ? does only works for multiactivities

#715 tischi opened 2 months ago
0
Shorten script to only include opening files

#714 felixS27 closed 2 months ago
0
Batch processing

#713 jhennies closed 2 months ago
5
Notebook to teach for loops in python

#712 felixS27 closed 2 months ago
1
Module batch processing: Loading results with MoBIE table fails

#711 jhennies opened 2 months ago
6
Remove OME-TIFF saving from first Image File Formats activity

#710 tischi opened 2 months ago
4
directly link activities for a specific implementation

#709 tischi closed 2 months ago
6
Remove template courses

#708 tischi closed 2 months ago
3
Image file format python script (see #705)

#707 felixS27 closed 2 months ago
1
Updates for batch processing

#706 jhennies closed 2 months ago
1
Jupyter notebook to teach on how to handle different file formats with python

#705 felixS27 opened 2 months ago
8
How to deal with python file paths

#704 tischi opened 2 months ago
1
Connected components: skimage 2 connected may be only 26-8 connected...

#703 tischi opened 2 months ago
0
Add 3-D shape measurement activity

#702 tischi opened 2 months ago
0
Simplify 3-D distance measurement

#701 tischi opened 3 months ago
1
Digital image basics: Napari, add cropped image to viewer

#700 tischi opened 3 months ago
1
Module calibration: Napari scale bar?

#699 tischi opened 3 months ago
1
Add file conversion activity to batch analysis module

#698 tischi opened 3 months ago
0
Image registration

#697 tischi opened 3 months ago
0
Volume rendering, volume slicing, spatial calibration

#696 tischi opened 3 months ago
1
Fix Chat-GPT link

#695 jluethi closed 3 months ago
1
Update 2024_07_IDIP-Heidelberg_skimage_napari_beginners.md

#694 Charlotte1001 opened 3 months ago
0
Update 2024_07_IDIP-Heidelberg_skimage_napari_beginners.md

#693 Charlotte1001 closed 3 months ago
0
Minimal CZI or ND2 or LIF example data needed

#692 tischi opened 3 months ago
2
TIFF module

#691 tischi opened 3 months ago
1
object measurement introduce eccentricity in explanation, python circularity calculation

#690 manerotoni opened 3 months ago
2
open of images use a generic library

#689 manerotoni opened 3 months ago
3
Collage images in LUT are not tiff standard format

#688 manerotoni opened 3 months ago
0
py: Fix inspect binary 8bit/Fix ci: Remove iinfo for bool array

#687 k-dominik closed 4 months ago
1
Added basic implementation for string and path manipulation in python

#686 k-dominik closed 4 months ago
2
add example of computing an otsu threshold of each label in the intensity measurements module

#685 tischi opened 4 months ago
0
Improve for-loop module

#684 tischi opened 4 months ago
0
Implement python activities for "Working with Strings"

#683 tischi closed 4 months ago
0