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Hello everyone,
I downloaded 5 TCGA-BRCA samples (by choosing specific criteria - I got five tumor samples and their five normal samples) and I run `CIRIquant` on them. I performed differential exp…
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Is it possible to perform differential expression analysis for each patient and to get the output logFC for each patient
Thanks.
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/722
### Describe the goals of this analysis module.
To use CellT…
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I’m experiencing **Error executing process > 'pipeline:makeReport (1)'** this same issue across multiple versions. I’ve tried various versions, starting from the lowest to the newest wf-transcriptomes…
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Hi!
I was wondering if there is option to use this for differential state analysis (differential expressiona analysis between stim vs ctrl) in a certain cell subset like B cells. So differential e…
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Blurb / summarize this: https://www.biorxiv.org/content/10.1101/2024.08.02.606405v1.full.pdf
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Hello, I am doing differential expression analysis and I got the following error, how can I fix it. Thank you!!
Can't use an undefined value as an ARRAY reference at /home/crt/anaconda3/opt/trinity-2…
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Hello,
I really enjoyed your paper (great method!), and I am applying spaCET for deconvolution of a lung cancer ST Visium data set. For validation, I would like to know how to find the marker genes …
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The expression difference test between the IncLevel1 column and the IncLevel2 column should use what statistical test method?
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The total counts of single cells differ significantly, which affects the downstream differential expression analysis. So I was thinking to normalize the data before differential expression analysis. S…