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CIRI-cookbook
Document for CIRI-series software
https://ciri-cookbook.readthedocs.io/en/latest/index.html
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Java error when running java -jar /apps/ciri/2.1.1/bin/CIRI_Full_v2.1.1.jar Pipeline
#34
SimoneRossi94
opened
2 months ago
0
Ciri-long with Ciri-AS and Ciri-Vis
#33
PycnopodiaD
opened
3 months ago
2
Annotation file
#32
jilguero888
opened
6 months ago
9
DS question
#31
ashleyhappiness
opened
10 months ago
0
CIRIquant
#30
ashleyhappiness
closed
1 year ago
3
CIRI-full Merge (step-by-step)
#29
ashleyhappiness
closed
10 months ago
1
sam dividing problem in CIRIquant
#28
kendaida
closed
1 year ago
0
A question about the results of differential expression analysis
#27
abedkurdi
opened
1 year ago
1
differential expression analysis
#26
abedkurdi
closed
1 year ago
6
Is CIRI2 or CIRIquant allowing for STAR-generated bam file?
#25
lovebaboon1989
opened
1 year ago
2
Error on running CIRI_Full Merge after running CIRI_Full step wise
#24
Firu-code
opened
1 year ago
0
Java exception when running RO2 in CIRI-Full
#23
sgardiner01
opened
1 year ago
3
How to merge results from CIRI2
#22
tjhwangxiong
opened
2 years ago
1
MemoryError
#21
Biocard
opened
2 years ago
6
Fail to run CIRIquant
#20
MaryamLabaf
opened
2 years ago
1
Bed files of CIRIquant are generated, but GTF quantitative files are not generated
#19
Biocard
opened
2 years ago
2
Updated conda yml file
#18
FalkoHof
closed
2 years ago
0
Added installation instructions for conda
#17
FalkoHof
closed
2 years ago
4
Struggling to Install
#16
danphillips28
opened
2 years ago
1
CIRIquant error!
#15
Alipe2021
opened
2 years ago
1
Java error when running CIRI_Full_v2.1.1.jar Pipeline
#14
smarhon
opened
2 years ago
1
java error when running CIRI_VIS
#13
Alipe2021
opened
2 years ago
1
CIRI-vis fails to generate a fasta file
#12
drwazeem
opened
2 years ago
9
java error when running CIRI-full.jar Merge module
#11
iichelhadi
closed
2 years ago
1
Error: org/apache/batik/svggen/SVGGraphics2D while using CIRI-vis
#10
bio-visualisation
closed
2 years ago
0
java error when running CIRI_VIS
#9
iichelhadi
closed
2 years ago
30
java error when running CIRI-full
#8
iichelhadi
closed
2 years ago
12
Running CIRI-full on single-end reads
#7
iichelhadi
closed
3 years ago
2
CIRI-AS command issues Please make sure the SAM is the same one used for circRNA detection by CIRI without modification! eventhough I am using the same SAM file
#6
iichelhadi
closed
3 years ago
2
Discussion of inner distance in paired end to ciri2 result
#5
gumingmu
closed
2 years ago
1
CIRIquant analyse single end data
#4
1409605824
closed
3 years ago
1
a spelling mistake : --libary-type, which should be `--library-type`
#3
gnilihzeux
closed
3 years ago
1
Description of Further Analysis
#2
DarioS
opened
4 years ago
4
Incorrect Suffix in Example
#1
DarioS
closed
4 years ago
1