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### Bioengineering and Genetic Bits in Database Management Systems (DBMS) Infrastructure
#### Bioengineering in DBMS
Bioengineering, particularly in the context of synthetic biology and genetic engin…
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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** TWIST v8
**Protocol:** Pre Processi…
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Dear Till,
I hope you are well and that I am not bothering you too much. I am working on DNA metabarcoding of the stomach contents of Atlantic bluefin tuna by amplifying partial fragments of the COI …
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Hi, thanks for your work!
Can advise me the on data pre-processing pipeline that you used? Which OAS columns did you use to transcribe and translate DNAs to antibodies? How did you implement the tr…
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Hi,
I'm interested in running PhyloCSF++ with annotate-with-mmseqs on Chinese hamster, but I am getting an error when it reaches the _mmseqs createsubdb_ step:
` ./phylocsf++ annotate-with-mm…
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## 🐛 Bug
It seems that at some point, when choosing to follow the `zyx` "row-major" ordering, we also assumed a left-handed coordinate system. This goes against expectations and often results is mi…
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MeltzerLab_processing_snakemake/
├── config
│ ├── aPipe_project_config.yaml
│ ├── cluster.yaml
│ ├── resources.yaml
│ └── version.yaml
├── ngs_aPipe.sh
├── profile
│ └── default
│ …
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**Project description**
Add Flexbar, a DNA barcode processing tool, to nixpkgs
**Metadata**
* homepage URL: https://github.com/seqan/flexbar/wiki
* source URL: https://github.com/seqan/flexb…
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INFO @ Wed, 11 Sep 2024 16:26:23: Processing GTF files ...
INFO @ Wed, 11 Sep 2024 16:26:23: Building gene index .......
100000 GTF lines processed.
200000 GTF lines processed.
300000 GTF…
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- [x] https://github.com/biocompute-objects/portal_userdb/issues/358
- [x] https://github.com/biocompute-objects/portal_userdb/issues/360
- [x] https://github.com/biocompute-objects/portal_userdb/issu…