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cpockrandt
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PhyloCSFpp
PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.
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Predicting CDS regions for gene fusions with PhyloCSFpp?
#15
apsteinberg
opened
2 months ago
0
creating multiple sequence alignments for plants
#14
colindaven
opened
7 months ago
0
Scores are not calculated for multi-fasta input by `score-msa` subcommand
#13
mt1022
opened
1 year ago
0
Cannot generate scores for hg38 maf
#12
asumann
opened
1 year ago
0
OpenBLAS Warning creating heavy logs
#11
aathbt
opened
2 years ago
1
Error when running mmseqs createsubdb: sh: 1: Syntax error: ")" unexpected
#10
marcasriv
opened
2 years ago
7
Set up CI with Azure Pipelines
#9
cpockrandt
closed
3 years ago
0
Splitting ungapped alignments to speed up parallelization
#8
cpockrandt
closed
3 years ago
0
New feature 'find-cds'
#7
cpockrandt
closed
3 years ago
0
Phylo csf++ bed included
#6
pskvins
closed
3 years ago
9
Issue in assert(lpr_per_codon[thread_id].size() * 3 <= bls_per_bp[thread_id].size());
#5
pskvins
closed
3 years ago
1
Annotation imprvmt
#4
cpockrandt
closed
3 years ago
0
static builds
#3
cpockrandt
closed
3 years ago
0
PhyloCSF Tracks implementation using HMMs
#2
martin-steinegger
closed
3 years ago
0
TODO
#1
cpockrandt
opened
3 years ago
0