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## 1. Bug description
When running finemap_loci on my 11 topSNPs, it proceeds successfully with 4 of them but fails for the other 7. The error (when it occurs) appears to happen during Step 2: Extr…
dym22 updated
5 months ago
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While exploring the results in the echolocatoR Shiny app, I noticed that FINEMAP never returns more than 1 credible set per locus. This was confusing since SuSiE often returns more than 1 credible set…
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Alkes price lab moved their data to Google Storage. This is....not great, because it may mean all the data is now behind a paywall.
https://alkesgroup.broadinstitute.org/UKBB_LD/
Will see if I c…
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Tried to stat up the downloadr and got this error:
\StreaMonitor-master>python Controller.py
Traceback (most recent call last):
File "C:\Users\Donald\Documents\StreaMonitor-master\Controller.py…
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just got this running
Note that
Polyfun susie does not get to run as it is missing the environment
Also note the software is installed
## Code
```
columnsnames = echodata::construct_col…
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HI,
I am having this issue running eQTL.Catalogue.query. I thought It could be somehow related with tabix, so I updated the yaml file. I removed tabix, and added htslib to solve the environment aga…
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## 1. Bug description
Hi I am unable to properly run finemap_loci with a quantitative GWAS.
Few things to highlight so far.
- The sample size column to do finemapping for a quant GWAS is not …
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I just got this running
Note that:
- ABF does not get to if proportion_cases is missinng
- polyfun_susie is missing the environment.
## Code
```
columnsnames = echodata::construct_colmap(m…
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Hi,
Thank you for writing such a nice package.
I have a question regarding the plotting the genes in gg_locusplot function.
When I run the code with "plot_genes = FALSE", it is perfectly f…
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It looks like my GH token is not getting passed to the Dockerfile when it's run through the GHA workflow.
https://github.com/RajLabMSSM/echolocatoR/actions/runs/3369321084/jobs/5588841392#step:33:…