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Dear njaupan,
I use ecc_finder to assembly ECCDNA from two paired short reads,but the Unicycler.log said it was faided and the spades_assembly directory was deleted. How can I set options to get a co…
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@iprada ,
Hello!
I was performing the Circle-Map Realign tutorial, and encountered a few warnings.
[bam_sort_core] merging from 4 files and 6 in-memory blocks...
2024-03-31 18:50:47: Realignin…
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Dear @crimBubble,
first of all thank you for writing this software :)
I would like to ask you for help regarding running the test data.
When I run the script as instructed (with addition of `-cpu…
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I have tried to identify eccDNA from nanopore reads using FLED, but I got an error as shown as following.
```shell
eccDNA Detection Begins !
2023-07-18 19:42:06: Parse SAinfo for continuous SA…
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Hi Jens,
I am using AmpliconSuite for a set of cancer WGS data. I have 36 samples, most of them finished successfully. But there are 10 of them that have been running for 5 days. And still not finis…
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Hi Iñigo,
I was performing the Circle-Map Realign tutorial, and encountered a few warnings.
My command:
```
Circle-Map Realign -t 4 -i sort_circular_read_candidates.bam -qbam qname_unkno…
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@crimBubble @molbio-dresden
Hope you are well down.
I am trying to use Eccsplorer to find eccDNA from my own data, but get info " No high (potential) confidants eccDNA candidate regions found". Dur…
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Hello,
i ran ecc_finder on my illumina seq data (in conda env, as suggested in manual site). The pipeline produced 2 output folders: align_files and peak_files and ecc.sr.site.bed file. I have noti…
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Is this basically saying that it cannot deal with unmapped reads? How can I fix this? Thanks!
Traceback (most recent call last):
File "/mnt/c/linuxdata/eccDNA_RCA_nanopore/./eccDNA_RCA_nanopore.…
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Dear Author:
I encountered a problem when using Circle-Map. I found that when running Circle-Map Realign, the progress bar is always 0%, as shown below. I thought it was a problem of buildin…