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Dear all,
I've been looking using the restriction modules in Bioperl and I think that, for some enzymes, it is not properly calculating the overhang sequence. For example, with EcoRI it looks fin…
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They are involved in the heroin metabolism:
http://wikipathways.org/index.php/Pathway:WP2645
And listed in this "opinion" as typically neglected but relevant for drug metabolism (and see refs at the…
egonw updated
9 years ago
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### Setup
I am reporting a problem with Biopython 1.81, Python 3.8.17, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_impleme…
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Using EC numbers should be the simplest method.
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![image](https://user-images.githubusercontent.com/38135561/168258381-88e5b291-6cfa-4085-ab23-f3f2026a021a.png)
my processed are being killed, not sure why yet.
Is there a debug portion of the outpu…
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# Feature Description
While attempting to replicate the [MetabolicAtlas](https://github.com/MetabolicAtlas/MetabolicAtlas) website, I noticed that the GotEnzymes module is empty. Upon inspecting th…
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I have been playing with ENZYMES dataset and found that there are no feature names for node features provided in README or anywhere else (or I need help finding them). While in the referenced paper ([…
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Hi,
Could you please give me some more info about the confidence score? How would you define a high-quality prediction, for both enzymes and non-enzymes and how to select an HQ dataset?
Than yo…
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From Alyssa:
```
Pour [le pathway] drug metabolism- cytochrome P450, j'ai bien des enzymes en couleurs mais je ne sais pas si elles appartiennent toutes à mon jeu de données.
Le pathway est sorti a…
pkrog updated
4 years ago
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There is a new Comet version http://comet-ms.sourceforge.net/ with many fixes and a few new features, including mzID support.
Unfortunately no PTM yet.
And we should finally add all of our enzymes…