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Greetings ffq developers,
Could anyone help explain a bit why my first attempt to fetch the accession information from one paper (https://doi.org/10.1016/j.cell.2023.01.034) fails, while my second …
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I've run many tests on this tool ```https://github.com/gregvonkuster/galaxy_tools/tree/master/tools/epigenetics/ideas``` with no changes to the tool, the test data and the environment, and the test so…
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Hello @guanjue,
I wanted to understand the purpose of certain parameters.
1. `cap`
I just set this to the highest number in my dataset.
That seems a bit strange to do though since there may …
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In some recent revisions "regulation of heterochromatin spreading" and heterochromatin boundary formation were merged.
However, according to
the FACT complex does have a distinct role in "hete…
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Hello @guanjue,
I'm curious if this seems concerning to you.
My dataset was 7 cell types and 5 marks.
However, the number of states in my heatmap seems to be 6.
1. How exactly is that pos…
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| Name | Description | Size | Format | URL |
| --- | --- | --- | --- | --- |
| World Bank - Light Every Night | Light Every Night - World Bank Nightime Light Data – provides open access to all night…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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Hi,
Thank you for providing this amazing tool! I am a newbie using it, but I could start with the basics. I've got clones in my data with different CNV profiles. Analyzing the single-cell RNA-seq dat…
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add synonym
maintenance of transcriptionally poised chromatin
(@colinlog @pgaudet do we prefer this as a label? it gets the point across better that this is maintaining the chromatin and the *ab…
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Kind greetings @guanjue,
This is such an AWESOME TOOL which I discovered after looking at `IDEAS` and `IDEAS_2018`!
I'm interested in applying it to 100's of samples worth of data related to Hun…