galaxyproject planemo issues

galaxyproject / planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

https://planemo.readthedocs.io/

MIT License

90 stars 85 forks source link

issues

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Enhancements for IWC

#1482 mvdbeek opened 4 days ago
1
Fix repository category update

#1481 mvdbeek closed 4 weeks ago
3
New toolshed categories are not updating for the existing tools

#1480 pavanvidem closed 4 weeks ago
15
[Feature request] Use a TRS ID instead of a file for Planemo Run

#1479 Delphine-L opened 1 month ago
0
planemo autoupdate may fail on tools but exit code is 0

#1478 lldelisle opened 2 months ago
0
Don't assume default master key works

#1477 mvdbeek opened 2 months ago
1
planemo's configuration of bioblend's api key prevents running commands without authentication that don't require it

#1476 hexylena opened 2 months ago
4
Synchronize with Galaxy Post 24.2 Publication

#1475 jmchilton opened 2 months ago
1
Fix up autopygen type annotation

#1474 mvdbeek closed 2 months ago
0
Display last lines of logs

#1473 mvdbeek closed 3 months ago
0
Rewrite tool linters defined in planemo

#1472 bernt-matthias opened 4 months ago
0
add extended-assertions requirements

#1471 bernt-matthias closed 4 months ago
0
Pin galaxy-tool-util to >=24.0.2

#1470 nsoranzo closed 4 months ago
1
Planemo error upload1

#1469 marieBvr opened 4 months ago
0
Planemo test : Failed to install Galaxy via command

#1468 marieBvr closed 4 months ago
1
use target_str_to_targets from tool-util package

#1467 bernt-matthias opened 4 months ago
0
Run CI tests against newer Galaxy versions

#1466 bernt-matthias closed 4 months ago
0
Check lint skip types only for tool linting

#1465 bernt-matthias closed 2 months ago
3
Increase worflow linting

#1463 lldelisle closed 4 months ago
17
Add option to create a minimal markdown test report

#1462 bernt-matthias closed 4 months ago
4
Add the option to provide a history id to run the workflow in

#1461 Delphine-L closed 4 months ago
0
Update pinning for Galaxy 24.1

#1460 bernt-matthias closed 4 months ago
3
Search function on readthedocs is not Working

#1459 Delphine-L closed 1 month ago
0
Workflow best practices: check that creator identifiers are URIs

#1458 elichad closed 4 months ago
1
Add a new single cell category

#1457 pavanvidem closed 4 months ago
2
`test_reports` add possibility to output minimal markdown output

#1456 bernt-matthias closed 4 months ago
0
Galaxy upload tool fails when using planemo server on galaxy release branch 24.0

#1455 richard-burhans closed 4 months ago
4
Remove myself from committer list

#1454 simonbray closed 5 months ago
1
Make sure that skip list does not get `['']` (if no skip is given)

#1453 bernt-matthias closed 4 months ago
3
Fix autoupdate for workflows with overlapping tool updates

#1452 bernt-matthias closed 2 months ago
2
add assertion that autoupdate does not modify input description

#1451 bernt-matthias opened 6 months ago
0
Install prebuilt client by default

#1450 mvdbeek closed 6 months ago
0
Return inputs ID in --test_output_json outputs

#1449 Delphine-L opened 7 months ago
0
Allow planemo run to send invocation to an existing history

#1448 Delphine-L closed 4 months ago
1
replace dead link in conclusions

#1447 martenson closed 7 months ago
0
replace dead docs link

#1446 martenson closed 7 months ago
0
Implement run/test/workflow_edit/autoupdate from non default tool sheds

#1445 mvdbeek closed 6 months ago
0
Add text to autopygen exceptions

#1444 bernt-matthias closed 6 months ago
0
Drop circleci config

#1443 mvdbeek closed 7 months ago
1
Fix linting of asserts with children

#1442 bernt-matthias closed 7 months ago
0
Bump galaxy packages to allow for 24.0

#1441 bernt-matthias closed 6 months ago
0
Fix markdown template: add missing closing details tag

#1440 bernt-matthias closed 8 months ago
4
Fix parsing of training ``metadata.yaml`` files

#1439 nsoranzo closed 7 months ago
2
Use proper tmpdir for jobfiles

#1438 bernt-matthias opened 8 months ago
2
Misc workflow linting improvements

#1437 bernt-matthias closed 8 months ago
0
Test against existing invocation

#1436 bernt-matthias closed 8 months ago
1
Allow initializing workflows from failed invocations

#1435 bernt-matthias opened 8 months ago
0
Addition of metadata generation for planemo run

#1434 Delphine-L opened 9 months ago
3
Don't skip requirements with an environment marker

#1433 nsoranzo closed 8 months ago
0
autopygen: missing module stdlib-list

#1432 thorstenwagner closed 8 months ago
2