galaxyproject planemo issues

galaxyproject / planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

https://planemo.readthedocs.io/

MIT License

86 stars 85 forks source link

issues

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Run CI tests against newer Galaxy versions

#1466 bernt-matthias closed 6 days ago
0
Check lint skip types only for tool linting

#1465 bernt-matthias opened 1 week ago
2
Increase worflow linting

#1463 lldelisle closed 5 days ago
17
Add option to create a minimal markdown test report

#1462 bernt-matthias closed 5 days ago
4
Add the option to provide a history id to run the workflow in

#1461 Delphine-L closed 1 week ago
0
Update pinning for Galaxy 24.1

#1460 bernt-matthias closed 5 days ago
3
Search function on readthedocs is not Working

#1459 Delphine-L opened 1 week ago
0
Workflow best practices: check that creator identifiers are URIs

#1458 elichad closed 5 days ago
1
Add a new single cell category

#1457 pavanvidem opened 1 week ago
1
`test_reports` add possibility to output minimal markdown output

#1456 bernt-matthias closed 5 days ago
0
Galaxy upload tool fails when using planemo server on galaxy release branch 24.0

#1455 richard-burhans closed 1 week ago
4
Remove myself from committer list

#1454 simonbray closed 3 weeks ago
1
Make sure that skip list does not get `['']` (if no skip is given)

#1453 bernt-matthias closed 1 week ago
3
Autoupdate: start a separate instance for each workflow

#1452 bernt-matthias opened 1 month ago
2
add assertion that autoupdate does not modify input description

#1451 bernt-matthias opened 1 month ago
0
Install prebuilt client by default

#1450 mvdbeek closed 2 months ago
0
Return inputs ID in --test_output_json outputs

#1449 Delphine-L opened 2 months ago
0
Allow planemo run to send invocation to an existing history

#1448 Delphine-L closed 1 week ago
1
replace dead link in conclusions

#1447 martenson closed 2 months ago
0
replace dead docs link

#1446 martenson closed 2 months ago
0
Implement run/test/workflow_edit/autoupdate from non default tool sheds

#1445 mvdbeek closed 2 months ago
0
Add text to autopygen exceptions

#1444 bernt-matthias closed 2 months ago
0
Drop circleci config

#1443 mvdbeek closed 3 months ago
1
Fix linting of asserts with children

#1442 bernt-matthias closed 3 months ago
0
Bump galaxy packages to allow for 24.0

#1441 bernt-matthias closed 2 months ago
0
Fix markdown template: add missing closing details tag

#1440 bernt-matthias closed 3 months ago
4
Fix parsing of training ``metadata.yaml`` files

#1439 nsoranzo closed 3 months ago
2
Use proper tmpdir for jobfiles

#1438 bernt-matthias opened 3 months ago
2
Misc workflow linting improvements

#1437 bernt-matthias closed 3 months ago
0
Test against existing invocation

#1436 bernt-matthias closed 4 months ago
1
Allow initializing workflows from failed invocations

#1435 bernt-matthias opened 4 months ago
0
Addition of metadata generation for planemo run

#1434 Delphine-L opened 4 months ago
3
Don't skip requirements with an environment marker

#1433 nsoranzo closed 4 months ago
0
autopygen: missing module stdlib-list

#1432 thorstenwagner closed 4 months ago
2
Output files detected with size 0 on planemo tests

#1431 pcm32 opened 5 months ago
2
Add `--host` parameter to allow listening on non-default hosts

#1430 selten closed 4 months ago
0
Planemo serve: --host not utilised

#1429 selten closed 4 months ago
1
Add option to pass extra arguments to `docker run`

#1428 bernt-matthias closed 5 months ago
6
Fix workflow_edit

#1427 mvdbeek closed 5 months ago
1
Improve docs with regards to running and testing workflows

#1426 wm75 opened 5 months ago
7
Update to black 2024 stable style

#1425 nsoranzo closed 5 months ago
0
Fix use of `package_name` attribute on `CondaTarget` objects

#1424 nsoranzo closed 5 months ago
4
Input staging problem: History not found

#1423 bernt-matthias opened 5 months ago
0
Don't crash autoupdate on non-PEP440-compliant tool versions

#1422 nsoranzo closed 6 months ago
0
planemo lint fails with lxml version 5.0.0

#1421 patrick-austin closed 6 months ago
3
Tool linting add `--skip_file` and remove lxml schema validation

#1420 bernt-matthias closed 2 months ago
1
Add now mandatory readthedocs config files

#1419 nsoranzo closed 6 months ago
1
readthedocs is out of date

#1418 lldelisle closed 6 months ago
0
Validate with jsonschema

#1417 mvdbeek opened 7 months ago
1
Update action versions

#1416 nsoranzo closed 7 months ago
1