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galaxyproject
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planemo
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
https://planemo.readthedocs.io/
MIT License
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Fix workflow_edit
#1427
mvdbeek
closed
8 months ago
1
Improve docs with regards to running and testing workflows
#1426
wm75
opened
8 months ago
7
Update to black 2024 stable style
#1425
nsoranzo
closed
8 months ago
0
Fix use of `package_name` attribute on `CondaTarget` objects
#1424
nsoranzo
closed
8 months ago
4
Input staging problem: History not found
#1423
bernt-matthias
opened
8 months ago
0
Don't crash autoupdate on non-PEP440-compliant tool versions
#1422
nsoranzo
closed
8 months ago
0
planemo lint fails with lxml version 5.0.0
#1421
patrick-austin
closed
9 months ago
3
Tool linting add `--skip_file` and remove lxml schema validation
#1420
bernt-matthias
closed
5 months ago
1
Add now mandatory readthedocs config files
#1419
nsoranzo
closed
9 months ago
1
readthedocs is out of date
#1418
lldelisle
closed
9 months ago
0
Validate with jsonschema
#1417
mvdbeek
opened
10 months ago
1
Update action versions
#1416
nsoranzo
closed
10 months ago
1
planemo training_init creates maintainers not editorial_board
#1415
patrick-austin
closed
6 months ago
2
planemo test_workflow with list:list collections
#1414
lldelisle
closed
10 months ago
1
planemo lint workflow tests improvement
#1413
lldelisle
opened
10 months ago
0
Fix workflow download when using instance id
#1412
mvdbeek
closed
10 months ago
0
planemo lint multiple
#1411
lldelisle
opened
10 months ago
0
Remove introduction header from training init
#1410
hexylena
closed
10 months ago
0
Uploading/mirroring of test data
#1409
mvdbeek
opened
10 months ago
1
Pretty-print workflow and use correct version of linked workflow in ``workflow_test_init``
#1408
mvdbeek
closed
10 months ago
1
Fix running workflow tests when there are multiple tests
#1407
mvdbeek
closed
10 months ago
3
Fix matching of tool ids to autoupdate
#1406
nsoranzo
closed
10 months ago
0
Cheetah parsing error of variable on Galaxy execution when planemo tests using the same variable pass
#1405
pcm32
closed
10 months ago
1
planemo autoupdate workflows improvements
#1404
lldelisle
opened
10 months ago
0
planemo autoupdate report bug
#1403
lldelisle
closed
10 months ago
2
Fix test result download
#1402
mvdbeek
closed
11 months ago
0
Implement running tests against existing invocation
#1401
mvdbeek
closed
11 months ago
1
Make test reports more resilient to failing invocations
#1400
mvdbeek
closed
11 months ago
0
Fix zenodo test, drop explicit datatype mapping
#1399
mvdbeek
closed
11 months ago
2
Change info message for markdown readme in repo
#1398
bernt-matthias
closed
11 months ago
5
Add missing ``Astronomy``, ``CLIP-seq`` and ``Materials science`` TS categories
#1397
bernt-matthias
closed
11 months ago
0
Fix linting rule selection
#1396
bernt-matthias
closed
11 months ago
0
Fix workflow_lint for json output values
#1395
mvdbeek
closed
11 months ago
0
add --skip to shed_lint
#1394
bernt-matthias
closed
11 months ago
0
Remove API key requirement from training_init
#1393
hexylena
closed
12 months ago
0
planemo should catch when Python isn't there
#1392
jmchilton
opened
1 year ago
1
Try to fix planemo test workflow when output is collection with identical name
#1391
lldelisle
closed
1 year ago
7
planemo serve breaks with new docker version when running tools
#1390
pcm32
opened
1 year ago
5
Track subworkflow invocations after main invocation is scheduled
#1389
mvdbeek
closed
1 year ago
0
Update upper bound for galaxy packages to < 23.2
#1388
bernt-matthias
closed
10 months ago
15
Support for testing workflows with conditional steps
#1387
mvdbeek
closed
1 year ago
2
Sync planemo and planemo virtual appliance docs
#1386
bernt-matthias
opened
1 year ago
0
Add pick_value to distro_tools
#1385
mvdbeek
closed
1 year ago
0
Allow missing conda_exec
#1384
mstabrin
closed
1 year ago
1
Fix profile version test
#1383
bernt-matthias
closed
1 year ago
0
Fix type comparisons
#1382
bernt-matthias
closed
1 year ago
0
Run galaxy with default tools included
#1381
bernt-matthias
closed
8 months ago
5
Expose some history related option to test
#1380
bernt-matthias
opened
1 year ago
0
Fix for change of base_url in BioBlend 1.2.0
#1379
nsoranzo
closed
1 year ago
1
Optimize disk space usage for `planemo test`
#1378
bernt-matthias
closed
1 year ago
2
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