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We have generated RNA-seq data for the same donors across two conditions. We have called QTLs on each condition separately. But to increase power we would like to perform a joint analysis treating th…
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1. When requested mem = 50G, the run fails saying not enough mem
```
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qname csg2.q
hostname node88
group hs3163
ow…
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Hello, I encountered the following bug when running R-peer again
this is my code:
lib…
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As a **user** I want **run validation before the data release is produced** because **I want to ensure data we generate is correct.**
## Background
The ETL run with steps:
- `study_validation`…
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- [ ] Finish molQTL plotting scripts and plot coverage data for bunch of Colocalized QTL effects
- [ ] Add more GWAS. Need to edit some scripts to accommodate binary outcomes for some gwas... see (…
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### Project short name:
-Human-10x3pv2--4
### Primary Wrangler:
### Secondary Wrangler:
### Link to Ingest
* https://contribute.data.humancellatlas.org/projects/detail?uuid=f2078d5f-2e7d-4844-855…
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Error in susie_suff_stat(XtX = XtX, Xty = Xty, n = n, yty = (n - 1) * :
The estimated prior variance is unreasonably large.
This is usually caused by mismatch between the summary statistic…
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The eQTL Catalogue makes available through FTP their credible sets extracted after fine mapping summary statistics with SuSIE.
So far, we have generated credible sets from GTEx summary statistics. Th…
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Dear,
TensorQTL in trans mode (tran-eQTL) displays the following error message at the Terminal window. It also shows the warning: " 'rfunc' cannot be imported. R and the 'rpy2' Python package are n…
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Dear,
TensorQTL in trans mode (tran-eQTL) displays the following error message at the Terminal window. It also shows the warning: " 'rfunc' cannot be imported. R and the 'rpy2' Python package are …