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I recently ran into a timeout when testing one of the frontend apps at discovery.indra.bio and saw on the backend that the issue was that there were new files being downloaded for pyobo. To resolve th…
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## Preferred term label
KOLF2-C1
## Synonyms
HPSI0114i-kolf_2-C1, WTSIi018-B-1
## Textual definition
Human induced pluripotent stem cell line, derived from a healthy white British male,…
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It recently came to my attention that CHEBI has a relationship type has_major_microspecies_at_pH_7_3, however this does not actually seem to be used in the OWL file:
http://www.ontobee.org/ontology…
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I installed it according to the instructions, and it worked successfully.
However, when I made an entry query, many changes occurred in MetaCyc. such as
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I am not sure if this is an ontology or an annotation issue:
https://www.pombase.org/gene/SPBC17A3.03c
[IEA](http://wiki.geneontology.org/index.php/Infer…
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### Setup
Biopython version 1.79
### Steps to reproduce
```
>>> from Bio import ExPASy, SeqIO
>>> handle = ExPASy.get_sprot_raw("O23729")
>>> entry = SeqIO.read(handle, "swiss")
>>> entry…
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Hi @raymond91125
For the EC-RHEA-GO alignment project, we have a list of terms with no cross references at all (see https://docs.google.com/spreadsheets/d/1ytuqiOii6IYvMgy2rqRiy6JDCXIyucLcqcy5vFTO…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
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there are three ways of encoding a partial [enzyme code (EC)](https://bioregistry.io/ec) as an identifier, ie. a non-leaf node:
1. `EC:1.-.-.-` (e.g., as used in GO)
2. `EC:1` (e.g., as used in In…