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To be able to cover relevant use cases in the field of agrobiodiversity, taxon names need to include relevant infraspecific levels, eg. cultivars and landraces.
For changing the backbone and API r…
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I have been using mitochondrial annotation to teach prokka to a master class very successfully for the last few years - the mtDNA annotates very successfully and very fast so that the students can see…
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i have something like:
error inserting phage genome into phage table
There was an error adding phage somephage.gb.fixed to the database.
even after i import "db_schema.sql" and i use "fix_dnaMast…
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Hey @algrant ,
I'm trying to load whole genome of Actinomyces in GENtle via NCBI. I tried three from the list of hits after a search and they all loaded with script errors and producing a list of "??…
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- Due to differences in assemblies' quality and completeness. I decide to first start with wgs raw reads in the sra database.
- all Bioprojects with sra records was searched on genebank:
```
(lep…
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Hello,
I encountered an issue while trying to set up ezmap to perform some tests.
I did not use your setup to get around sudo restrictions of my workstation and tried to run the pipeline in deskto…
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Hi! I want to train augustus using a .gbff file I downloaded from ncbi https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/611/645/GCF_000611645.1_mono_v1/GCF_000611645.1_mono_v1_genomic.gbff.gz
But the…
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It is my first time using the D3GB library and I am trying to make a simple data browser with the genome for _Mycobacterium smegmatis_. I tried taking the data from different sources but I keep gettin…
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I found no equivalent for CO_325:0000021 'leaf emission rate'. It is defined as 'number of new leaves emitted over a period of time'.
Is it ok to say CO_325:0000021 is a subclass of TO:0000241 'leaf …
leova updated
8 years ago
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Dear Torsten,
**first of all thanks for your efforts on Prokka ! The whole community owe you one.**
I annotated my assemblies with Prokka 1.14.6 with "--compliant" option.
When uploading the …