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We noticed that in this model, these complexes were created using the "protein complex" icon
but they look like activity units (i.e. they have the activity unit icon in the corner).
Should they?
…
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There is currently a simple README file [generated](https://github.com/pantherdb/fullgo_paint_update/blob/732ffe8bf52433e4cd9390bae4c4d06c797543b2/Makefile#L170) at time of GO release download. Ex:
`…
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Review annotations GO:0007212 dopamine receptor signalling pathway
to check whether these are all GPCRs
See https://github.com/geneontology/go-ontology/issues/28005
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There is frequently a need to represent entities from a database as an ontology
See:
- [Limits of ontologies: How should databases be represented in OBO?](https://docs.google.com/presentation/d/…
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This method is fairly large and uncommented.
Could be split up into a few different methods or wrapped into a separate class to streamline `GeneOntology`
We should also write explicit tests for g…
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@pbuttigieg recently suggested switching to Dublin Core annotation properties, as opposed to of oboInOwl.
The NMDC team has been using oboInOwl in our templates, like [NMDC-03_EnvO_template_robot_s…
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TL;DR - there are uniprot KW and EC annotations to this family that contradict the literature.
I'll take yeast RAD26 as an exemplar here, but similar patterns are seen in orthologs.
Uniprot has …
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@LiNiMGI pointed out on the workbenches call that when she is required to move to the graph editor from the form. If she changes a single item in the graph and moves back to the form, all of the dates…
ukemi updated
7 months ago
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Background:
Basic modules must be DAGs; see:
https://oboacademy.github.io/obook/explanation/owl-format-variants/
_Basic: A variant of Simple, in that it is reduced to only a specific set of r…
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##### Project link
https://github.com/orgs/geneontology/projects/136
##### Project description
Currently, the GOC picks up MGI ortholog and upstream annotation data from MGI. The completion o…
kltm updated
2 months ago