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I have recently been running a MegaPRS on some meta-analysis summary statistics and using 1000G as a reference panel. This is something I have run earlier this year (prior to version 6) and it worked …
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**Lab Name**: Bioinformatics and Data Science in Biotechnology Lab
**Department**: Biotechnology and Biomedical Engineering
**List of Experiments and Repositories**:
1: Writing and…
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## *Repository Creation Request*
Use this to get your experiment repository created or updated on GitHub under Virtual Labs organization.
1. #### Coordinating Institute: Amrita Vishwa Vidyapeetham…
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Dear Dr. Pope,
I encountered a warning message when I tried to run radish with my dataset:
Warning message: In BoxConstrainedNewton(phi$phi, function(par, gradient, hessian) g(E = E, : `maxit` r…
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I ran this code, but it couldn't get the results in the LTS paper.
tcoln updated
4 years ago
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Hi szpiech，
Thank you for your tool. I have a question about it.
The map file is needed in the calculation of iHS. The genetic position of the rsID is required in the map file, but the SHA…
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Curious to know if/when you might support raw genotypes in RaPID?
Thanks!
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Hi, I am trying to run a test on D-stat with a single chromosome (chr38) of dog using an output of PLINK. I am only considering autosomes.
I first ran convertf in this .par file:
genotypename: D…
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The origin of the plant is the subject of debate.[26][27][28] O.F. Cook was one of the earliest modern researchers to draw conclusions about the location of origin of Cocos nucifera based on its curre…
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## Description
The current landscape of SARS-CoV-2 Omicron/BA.2 is such that genetic diversity is very, very low. Accordingly, it would be desirable for MicrobeTrace to gracefully "identify" clusters…