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szpiech
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selscan
Haplotype based scans for selection
GNU General Public License v3.0
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input data type
#119
timurrxxcd
opened
2 days ago
1
Error while trying to install
#118
TaniaPGue
opened
3 days ago
5
Error count of the derived haplotypes
#117
liuqi-C
opened
1 week ago
0
norm xp-nSL
#116
malteze2024
opened
1 month ago
2
norm xpehh top windows
#115
JuanitaGil
closed
2 weeks ago
2
XPEHH Results
#114
tori-rudolph
opened
1 month ago
3
pmap and .out blank
#113
Tom159357
opened
1 month ago
1
What is the meaning of normxpehh (not the results of windows)
#112
kuangzhuoran
opened
1 month ago
1
how to set the window size and step size for SNP files
#111
hjt1129
opened
1 month ago
3
Standardized scores do not appear for every SNP when the norm is used.
#110
spchavan10
opened
2 months ago
9
header of output by norm
#109
QianXiaobo
opened
2 months ago
1
Binomiol distribution of ihs values
#108
DaveLutgen
opened
5 months ago
4
strange iHS values
#107
QianXiaobo
closed
5 months ago
7
Weird false positive XP-nSL signals appeared with larger samples
#106
Ceonham
opened
6 months ago
2
selective sweep tests in inbred lines
#105
fersall
opened
8 months ago
9
sample size for XP-EHH
#104
cgdmkns
opened
9 months ago
4
problem about unstandardized iHS
#103
Bai-fengting
opened
9 months ago
1
Problem calculating iHS with 1000G 30x
#102
pclavell
opened
9 months ago
4
Anaconda.org still has only selscan 1.2?
#101
LTibbs
opened
11 months ago
1
Detecting natural selection signals in selfing populations
#100
Axolotl233
opened
11 months ago
1
Interpretation of normalized XP-EHH
#99
catferna
opened
12 months ago
3
confused about the normalization results of xp-ehh and ihs
#98
abcdefghijklmn97
opened
1 year ago
5
About iHH12 analysis
#97
Hupy0930
opened
1 year ago
3
Recomendations about using Physical map to compute iHS values.
#96
m-huertasp
opened
1 year ago
3
Question about genetic map
#95
Youpu-Chen
opened
1 year ago
4
difference in output for the same dataset iHS analysis (performed with selscan v1.2.0 and selscan v.2.0.0)
#94
BioInf2305
opened
1 year ago
2
Advice needed. Pooled population data.
#93
d00bin
closed
1 year ago
2
xpehh norm window output headers??
#92
ZachNikolakis
opened
1 year ago
1
Setting ehh-win and max-extend in XP-EHH calculation
#91
AliceIob
closed
1 year ago
1
A question about genetic map
#90
Captain-Pam
opened
1 year ago
16
The results are closely related with the monomorphic sites
#89
biozzq
opened
1 year ago
3
.OUT file blank
#88
aramesh97
opened
1 year ago
1
clerical error in the norm 1.3 update log information
#87
xuan-wang
opened
1 year ago
1
XP-EHH phased vs unphased
#86
jaholliday
opened
1 year ago
4
Alleles must be coded 0/1 only
#85
huangl07
opened
2 years ago
11
When calculate iHS,the result file is empty.
#84
meimingWu
opened
2 years ago
1
XPEHH P-hacking?
#83
Niraj-Rayamajhi
opened
2 years ago
3
what is recommended statistics test to scan positively selected loci (XP-nSL or XP-nHH ) between populations of two sub-species?
#82
farhan-lab
opened
2 years ago
2
Selscan load loci after running and after the process killed
#81
farhan-lab
opened
2 years ago
2
questions about xpehh results and ihs results
#80
sadiexiaoyu
opened
2 years ago
2
Working with the iHH12 statistic
#79
RamGonzalez
closed
2 years ago
2
norm --xpnsl --bp-win output head or explanation
#78
anhong11
opened
2 years ago
3
Working with large number of SNPs and few different haplotypes
#77
RamGonzalez
closed
2 years ago
5
ihs normalization - header
#76
JavierMenRev
opened
2 years ago
1
A confusing line in the output of "norm"
#75
Chen-SHuangHui
opened
2 years ago
5
norm across the genome
#74
sadiexiaoyu
closed
2 years ago
5
--winSize
#73
Daluser1
closed
2 years ago
11
EHH output interpretation
#72
sadiexiaoyu
closed
2 years ago
2
allele frequency and ihs value
#71
sadiexiaoyu
closed
2 years ago
4
EHH Statistics
#70
Daluser1
closed
2 years ago
2
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