issues
search
szpiech
/
selscan
Haplotype based scans for selection
GNU General Public License v3.0
114
stars
33
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Write output of norm into a specific directory
#132
DaisyLyu522
opened
4 days ago
0
WARNING: Reached chromosome edge before EHH decayed below 0.05 and empty output file
#131
dferran1
opened
3 weeks ago
1
initial selscan 2.1
#130
amatur
closed
3 weeks ago
0
what does "crit" means?
#129
KatherineAr
opened
1 month ago
1
ERROR: Variant physical position must be monotonically increasing.
#128
Tom159357
opened
1 month ago
1
Having an issue running selscan
#127
AsmaAllouch
opened
1 month ago
2
EHH physical position instead of locus ID
#126
cymdp
opened
2 months ago
7
Strange iHS results near centromeres, chromosome ends, and other large gaps
#125
mmcqui
opened
2 months ago
1
selscan dropping variants?
#124
mmcqui
opened
3 months ago
5
output file empty and command line flag --pmap not recognized.
#123
SquRunner
opened
3 months ago
6
Header for normalized result of iHS
#122
DaisyLyu522
closed
3 months ago
2
No output file
#121
xlhuang00
opened
3 months ago
2
ehh in Mac-arm version 2.0.3 doesn't work
#120
alisi1989
opened
3 months ago
7
input data type
#119
timurrxxcd
opened
4 months ago
1
Error while trying to install
#118
TaniaPGue
opened
4 months ago
5
Error count of the derived haplotypes
#117
liuqi-C
opened
4 months ago
1
norm xp-nSL
#116
malteze2024
opened
5 months ago
2
norm xpehh top windows
#115
JuanitaGil
closed
5 months ago
2
XPEHH Results
#114
tori-rudolph
opened
6 months ago
3
pmap and .out blank
#113
Tom159357
opened
6 months ago
1
What is the meaning of normxpehh (not the results of windows)
#112
kuangzhuoran
opened
6 months ago
1
how to set the window size and step size for SNP files
#111
hjt1129
opened
6 months ago
3
Standardized scores do not appear for every SNP when the norm is used.
#110
spchavan10
opened
6 months ago
9
header of output by norm
#109
QianXiaobo
opened
7 months ago
1
Binomiol distribution of ihs values
#108
DaveLutgen
opened
9 months ago
4
strange iHS values
#107
QianXiaobo
closed
9 months ago
7
Weird false positive XP-nSL signals appeared with larger samples
#106
Ceonham
opened
11 months ago
2
selective sweep tests in inbred lines
#105
fersall
opened
1 year ago
9
sample size for XP-EHH
#104
cgdmkns
opened
1 year ago
4
problem about unstandardized iHS
#103
Bai-fengting
opened
1 year ago
1
Problem calculating iHS with 1000G 30x
#102
pclavell
opened
1 year ago
4
Anaconda.org still has only selscan 1.2?
#101
LTibbs
opened
1 year ago
1
Detecting natural selection signals in selfing populations
#100
Axolotl233
opened
1 year ago
1
Interpretation of normalized XP-EHH
#99
catferna
opened
1 year ago
3
confused about the normalization results of xp-ehh and ihs
#98
abcdefghijklmn97
opened
1 year ago
5
About iHH12 analysis
#97
Hupy0930
opened
1 year ago
3
Recomendations about using Physical map to compute iHS values.
#96
m-huertasp
opened
1 year ago
3
Question about genetic map
#95
Youpu-Chen
opened
1 year ago
4
difference in output for the same dataset iHS analysis (performed with selscan v1.2.0 and selscan v.2.0.0)
#94
BioInf2305
opened
1 year ago
2
Advice needed. Pooled population data.
#93
d00bin
closed
1 year ago
2
xpehh norm window output headers??
#92
ZachNikolakis
opened
1 year ago
1
Setting ehh-win and max-extend in XP-EHH calculation
#91
AliceIob
closed
1 year ago
1
A question about genetic map
#90
Captain-Pam
opened
1 year ago
16
The results are closely related with the monomorphic sites
#89
biozzq
opened
2 years ago
3
.OUT file blank
#88
aramesh97
opened
2 years ago
1
clerical error in the norm 1.3 update log information
#87
xuan-wang
opened
2 years ago
1
XP-EHH phased vs unphased
#86
jaholliday
opened
2 years ago
4
Alleles must be coded 0/1 only
#85
huangl07
opened
2 years ago
11
When calculate iHS,the result file is empty.
#84
meimingWu
opened
2 years ago
1
XPEHH P-hacking?
#83
Niraj-Rayamajhi
opened
2 years ago
3
Next