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Hi guys!
I have some suggestions for improvement of the "Search SNVs and Indels" function which is actually a very useful tool to check mutation burden in a cohort compared to control cohorts.
h…
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Following on from discussion in #153 I see there is a big challenge in that the TRS API do not follow the [Hypermedia as the Engine of Application State](https://en.wikipedia.org/wiki/HATEOAS) princip…
stain updated
3 years ago
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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [Geno…
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- Integrating a lot of data source such as
- Clinical trial data
- Registry data
- Upcoming:
- EHR
- Genomics data
- "implementing ontologies"
- easy cleaning and formatting
- r…
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I created a singularity image from the docker image. When I ran juicer.sh in SLURM, I got this error
"`HiCCUPS: GPUs are not installed so HiCCUPs cannot be run` "
Does that mean CUDA and NVIDIA G…
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A master student from Brazil contacted me via email with questions how to run RPS-BLAST+ and `cdd2cog.pl` correctly. I'm copying the correspondence in here in case it is useful for someone else:
Hi, …
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https://github.com/kbase/KbaseAppCatalogStatic/blob/59a1083ac0741d8ca9fde1a4d349ec13b5d02353/templates/index.html#L7
There's a few basic things we can do for SEO. One of them is to add a Meta ta…
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as I was updating PO in the sol genomics database, I've ran into an issue with participates_in relationship,
which creates references between terms in plant_anatomy node and 'sporophyte phase' or 'ga…
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Hello, Pathoscope developers! @kacrandall @ecastron @mlbendall @rgranit
I am trying to use your tool for pathogen detection and I have a few questions regarding the usage:
what I understood from re…