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The bulk assign trait-EFO tool is throwing an error for all uploaded rows.
Eg. https://wwwdev.ebi.ac.uk/gwas/depo-curation/submissions/666833cd51d43d0001d7e113
2941 studies
Bulk assign file = [dhind…
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It is time to discuss the genome-wide significant p-value threshold for GWAS and molQTL studies. We started this discussion with @Daniel-Considine and @d0choa.
## Background
For now, we use the …
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It appears the nobs, MAF and effect are switched around? this happens with all my GAPIT GWAS results output csv files.
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The subject of the e-mail is usually in the form:
'[gwas-curator] GWAS Curation Queue *date*'
And it contains an Excel file named eg. 'data_queue_*date*.csv'
It is sent to gwas-curator@ebi.ac.uk …
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when i run LDpred2 with gwas of biobank Japan for parkinson disease and target genotypes data is 504 samples of EAS in 1KGP, it raise an error: ldsc h2 estimate value is negative (h2 = -0.000936). I d…
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Data associated with this project https://www.medrxiv.org/content/10.1101/2023.12.06.23299426v1 has been shared with Open Targets and needs ingesting into the GWAS Catalog. The data is presented in se…
ljwh2 updated
8 hours ago
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For the --fastBAT, it is written in the official webpage "The input file test.ma has columns including SNP ID, the effect allele, the other allele, frequency of the effect allele, effect size, standar…
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Dear scPagwas team,
Thank you very much for developing this invaluable tool for integrating scRNA and GWAS data. As we prepare our GWAS data for input into scPagwas, we have encountered some conf…
dbyzy updated
3 weeks ago
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In the phenotype page of any phenotype e.g. [https://dgrpool.epfl.ch/phenotypes/2636](https://dgrpool.epfl.ch/phenotypes/2636)
The section about the **Analyses** results is not very appealing (two bu…
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当我进行到Link_pathway_blocks_gwas这步操作的时候,我遇到了以下问题,请问应该如何解决,谢谢
* Start to link gwas and pathway block annotations for 327 pathways!
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