jianyangqt gcta issues - Githubissues

jianyangqt / gcta

GCTA software

GNU General Public License v3.0

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issues

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hardy-weinberg p-value set in fastGWA

#109 steffww closed 3 days ago
1
Weighted regression

#108 DrGengWang closed 3 days ago
1
Warning message running on fastGWA-mlm

#107 TinaNeik339 closed 1 week ago
1
Wrong error message with fastGWA (very small issue)

#106 dougspeed opened 2 weeks ago
1
Segmentation fault (core dumped)

#105 Elijah-Ugoh opened 4 weeks ago
9
mtCOJO is LDSC derived bxy_est ever used?

#104 nicksunderland opened 1 month ago
0
negative phenotypic variance of trait

#103 ehdhssh opened 1 month ago
0
GCTA does not read bim files

#102 yjchen529 opened 1 month ago
3
Error "Unexpected PLINK 1 .bed file size" when conducting fastGWA

#101 potatoj210 closed 1 month ago
4
Segmentation fault (core dumped) in mtCOJO

#100 Yunqihuang971116 opened 1 month ago
6
issue with large numbers of GRM parts

#99 jeremymcrae opened 2 months ago
0
fastBAT error reading SNP association from test.ma file

#98 Ewan-Simpson closed 2 months ago
2
Regarding the issue of default data filtering in FastGWA

#97 yuxizhang01 closed 1 month ago
1
Segmentation fault error

#96 mdickey7 opened 2 months ago
4
too many SNPs that have large difference in allele frequency

#95 aydanasg opened 2 months ago
2
Error: XtWX is not invertible.

#94 zzzzzzzy7 closed 1 month ago
4
Question reg V(G) est in GCTA 1.94.1

#93 RPorneso closed 3 months ago
2
[gcta-1.94.1-linux --Error with --envir

#92 Hannah430 closed 3 months ago
1
Abnormal memory requirements while making GRMs

#91 cjfei18 opened 3 months ago
3
Error: invalid option "--fastGWA-lr".

#90 Hannah430 closed 3 months ago
1
Error: the format of file [ldscores/1.l2.M_5_50] is incorrect

#89 aydanasg opened 3 months ago
1
--mpheno flag not working in gcta v1.94.1

#88 RPorneso closed 3 months ago
1
Build updates

#87 thebigcorporation opened 4 months ago
0
--fastGWA-mlm: Unexpected PLINK 1 .bed file size at tuning parameter step

#86 acannis closed 3 months ago
3
Can COJO take LD matrix as input

#85 Zhang-Rui-2018 opened 4 months ago
2
zsh: bad CPU type in executable: ./gcta64

#84 FrederickGri opened 5 months ago
1
Wrong filtering due to internal allele frequencies computation when using fastGWA

#83 SoCadiou opened 5 months ago
5
Problems with mtCOJO

#82 Zhangzzzzzy opened 5 months ago
1
Inquiry about the LD window size setting in the GSMR via GCTA tool

#81 laleoarrow closed 5 months ago
3
GCTB Issue

#80 eromic96 opened 6 months ago
1
--fastGWA-mlm-binary: segmentation fault at sparse grm reading step

#79 WeiCSong opened 6 months ago
1
format error in the input file, --fastBAT gene-set GWAS,

#78 wangxu1990 opened 6 months ago
3
Can this be built with OpenBLAS instead of the proprietary MKL?

#77 rekado opened 7 months ago
2
feat:add vif threshold param

#76 Taichidasheen opened 7 months ago
0
Remove one of the colinearity conditions which is not suitable for WGS

#75 chundruv opened 7 months ago
0
Forcing fastgwa to run MLM if heritability is not significant

#74 chenpunk closed 8 months ago
5
How to get the G-matrix with haploid data

#73 YouxinZhao opened 8 months ago
1
Error: the V matrix is not invertible.

#72 AmandaHWChong opened 9 months ago
9
Error: XtWX is not invertible.

#71 AmandaHWChong closed 9 months ago
3
Error: invalid sample size in line

#70 anafyp opened 9 months ago
1
Issue reading bgen index file

#69 chenpunk closed 10 months ago
1
Input multiple .sample files

#68 chenpunk closed 10 months ago
1
GRM matrix rows are too large for fastGWAsglmm to run.

#67 labxpub closed 10 months ago
6
Estimating the genetic variance (Vg) by fastGWA-REML (grid search) no results for a long time

#66 DonaldSandoz2000 closed 10 months ago
1
No results obtained by fastGWA-GLMM

#65 labxpub closed 11 months ago
0
Runtimes are grossly out of line with the article

#64 labxpub closed 11 months ago
2
sample_subset is not in strictly increasing order

#63 ZhangZhenYang-zzy closed 11 months ago
1
Error: invalid option "--grm-sparse".

#62 zengjian0101 closed 11 months ago
1
Error: the format of file [gsmr_exposure.txt] is incorrect, line 1.

#61 umbrellaling opened 11 months ago
2
Error: there are too many SNPs that have large difference in allele frequency

#60 shreya2031 opened 12 months ago
4