jianyangqt / gcta

GCTA software
GNU General Public License v3.0
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Segmentation fault (core dumped) in mtCOJO #100

Open Yunqihuang971116 opened 1 month ago

Yunqihuang971116 commented 1 month ago

Hi all, I recently met a Segmentation fault (core dumped) error in mtCOJO. It still remains when I increase server memory. The data format and quality have been checked. Has anyone met such kind of problems? Thanks! Accepted options: --mbfile mtcojo_ref_data.txt --mtcojo-file mtcojo_summary.txt --ref-ld-chr eur_w_ld_chr/ --w-ld-chr eur_w_ld_chr/ --out ./result/mtcojo_result

There are 22 PLINK genotype files specified in [mtcojo_ref_data.txt].

Reading the PLINK FAM files .... 489 individuals have been included from the PLINK FAM files. Reading the PLINK BIM files ... 9997231 SNPs to be included from PLINK BIM files.

Reading GWAS summary data from [mtcojo_summary.txt] ... 7099523 SNPs in common between the target trait and the covariate trait(s). Segmentation fault (core dumped)

anglixue commented 1 month ago

Hi Yunqi, How much memory did you provide for this job and which version of GCTA did you use?

Yunqihuang971116 commented 1 month ago

Hi Angli, It's 64G and version 1.93.2

anglixue commented 1 month ago

Would you mind installing the latest version 1.94.2? 1.93.2 is pretty old (4 years ago), and we have made numerous updates since then. Thanks!

Yunqihuang971116 commented 1 month ago

I tried version 1.94.1 for linux, but it still doesn't work.

Elijah-Ugoh commented 4 weeks ago

I tried version 1.94.1 for linux, but it still doesn't work.

Hello, have you been able to resolve the issue yet. I am having the same problem.

Yunqihuang971116 commented 4 weeks ago

I tried version 1.94.1 for linux, but it still doesn't work.

Hello, have you been able to resolve the issue yet. I am having the same problem.

I didn't :(.