hardy-weinberg p-value set in fastGWA

jianyangqt / gcta

GCTA software

GNU General Public License v3.0

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Closed steffww closed 3 days ago

steffww commented 3 days ago

Could I set hardy-weinberg p-value in fastGWA? I didn't find the option.

longmanz commented 3 days ago

Hi, Sorry, GCTA does not support that. Please use Plink2 for sophisticated QC like hardy-weinberg filtering.