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jianyangqt / gcta

GCTA software
GNU General Public License v3.0
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Error: invalid option "--fastGWA-lr". #90

Closed Hannah430 closed 3 months ago

Hannah430 commented 3 months ago

Hi,

I am trying to use --fastGWA-lr and --envir to assess linear regression-based analysis with the following code:

module load StdEnv/2020
module load gcc/9.3.0
module load gcta/1.93.2
gcta64 --bfile test_chr22 \
       --fastGWA-lr \
       --pheno gcta_pheno_test.txt \
       --qcovar gcta_qcovar_test.txt \
       --covar gcta_covar_cat_test.txt \
       --envir gcta_env_test.txt \
       --thread-num 10 \
       --out test_chr22

However, i kept on getting an Error of invalid option "--fastGWA-lr". I realized that this issue only arise when I add --envir in the code. Is there anything i can do to fix this issue?

Thank you! Hannah

longmanz commented 3 months ago

Hi Hannah, Please try to use the latest version of GCTA (v1.94.1). The --envir test is not available with the current version you are using. You can easily download the executable from https://yanglab.westlake.edu.cn/software/gcta/#Download .

Feel free to re-open this thread if you encounter any issue with v1.94.1