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jianyangqt / gcta

GCTA software
GNU General Public License v3.0
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fastBAT error reading SNP association from test.ma file #98

Closed Ewan-Simpson closed 2 months ago

Ewan-Simpson commented 2 months ago
gcta error fastbat

iv been getting this error when running fastBAT and iv tried everything that i can think of to fix it but this very uninformative error message is bewildering to me as i cant think of a reason why its popping up especially since i ran the same file through COJO just to make sure it works and it does so any hekp would be greatly appreaciated. if you require any information please let me know.

Ewan-Simpson commented 2 months ago

this is the full command im running:

gcta64 --bfile /scratch/project/mr_project_scratch/ukbb/Data/Genetic_v3/NRelLdRef/UkWbF-NRel50k-ImpQc-Chr12-Rsid --maf 0.01 --fastBAT test_file_QC.ma --fastBAT-gene-list gene_based_fastBAT.txt --out test --thread-num 10

Ewan-Simpson commented 2 months ago

found out the problem, for whatever reason when i loaded gcta in it loaded 1.94.0 rather than 1.94.1, rectifying that it works perfectly