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jianyangqt / gcta

GCTA software
GNU General Public License v3.0
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Wrong error message with fastGWA (very small issue) #106

Open dougspeed opened 2 weeks ago

dougspeed commented 2 weeks ago

Hi, I have noticed that if you forget to add --bfile when running fastGWA, the software gives the error message "Error: no phenotype file found." when perhaps it should say something like "Error: no genetic data provided"

Otherwise, the software seems to work very well, thanks

(for info, here is my full command /home/doug/gcta-1.94.1-linux-kernel-3-x86_64/gcta64 --out test --pheno /faststorage/project/dsmwpred/jasper/Pheno/all_quant --qcovar $HOME/dsmwpred/jasper/Supplemental/Real_70k/PCs_covs_409k_reg --extract snps.123 --fastGWA-lr )

longmanz commented 1 week ago

Hi @dougspeed , Thank you for pointing this out. Yes the error message is kind of messed up at the moment. We will try to fix it asap.