-
Searched for "IDH2: NM_002168.3:c.419G>A"
View details in Rollbar: [https://rollbar.com/jimmy.andrews/VariantGrid/items/3101/](https://rollbar.com/jimmy.andrews/VariantGrid/items/3101/)
```
Traceba…
-
Update the HGVS annotation and subsequently the GVF files to remove p. and c. attached to mutations
e.g. `p.T95I` should be `T95I`
-
Create an intergenic classification, for instance:
NC_000009.12:g.99087902A>C
This is intergenic, so will have no transcript thus no c.HGVS
No c.HGVS is treated as an error, so this causes a bunch …
-
**Describe the bug**
Brackets are gone for any protein position. As these are predictions they need to be there according to HGVS nomenclature
**To Reproduce**
Steps to reproduce the behavior:
1…
-
ENST00000361381.2(MT-ND4):c.278_279insT
NC_012920.1:m.11037_11038insT
Both went straight to the allele page when genome build set to GRCh38, without any warning that the alt was different
BUT correct…
-
Issue split out of SACGF/variantgrid_private#3472
"There's no attempted substituting of refs or alts for IGV/Locus/VCF, only for HGVS searches."
Also [reported against MT](https://github.com/SACGF/v…
-
## Describe the issue
For below variant:
`#CHROM POS ID REF ALT QUAL FILTER INFO`
`chr21 5233678 . A AATTT . . .`
In VEP 109.3, this variant has HGVS notation: ENST00000623753.1:n.132-758_132…
-
The current [hgvs_tools.py](https://github.com/ga4gh/vrs-python/blob/efbce313f501e86f9cc42565568d9d08a1cfaa85/src/ga4gh/vrs/utils/hgvs_tools.py#L16) does not consider the handling of hgvs expressions …
-
https://asia.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;g=ENSG00000136250;r=7:36512941-36724494;t=ENST00000617537
Web page Reports that the sequence is 2385 bases long
Ensembl API is in…
-
> Assuming the BM/RVs would attempt to acquire target before or early during active guidance phase- that is, before hitting atmosphere; that HGVs would at least do the same before final maneuvers and …