ga4gh vrs-python issues

ga4gh / vrs-python

GA4GH Variation Representation Python Implementation

https://github.com/ga4gh/vrs

Apache License 2.0

51 stars 27 forks source link

issues

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Provide maturity annotation for classes and fields

#466 jsstevenson opened 1 week ago
0
docs: clarify python 3.12 requirement for contributors

#465 korikuzma opened 2 weeks ago
0
test: re-run hgvs cassettes

#464 korikuzma closed 2 weeks ago
0
feat: add dev container as option for running jupyter notebooks

#463 korikuzma closed 2 weeks ago
0
Allele translator tests aren't passing (no code has changed)

#462 jsstevenson closed 2 weeks ago
1
fix: don't write digest property when `in_place=False`

#461 jsstevenson opened 2 weeks ago
0
Tests unable to collect due to variable shadowing in `test_schemas.py`

#460 jsstevenson closed 2 weeks ago
1
tests: fix basemodel shadow error

#459 jsstevenson closed 2 weeks ago
0
docs: clarify fork procedure for devs

#458 jsstevenson opened 3 weeks ago
0
Bug in the developer installation instructions

#457 melissacline opened 3 weeks ago
2
Documentation: Note that "python3.12" is required for development

#456 melissacline opened 3 weeks ago
0
cicd: fix action caching key

#455 jsstevenson closed 3 weeks ago
0
cicd: add basic precommit hooks

#454 jsstevenson closed 3 weeks ago
0
feat!: update gks-common / vrs models

#453 korikuzma closed 3 weeks ago
1
Update core + vrs models

#452 korikuzma closed 3 weeks ago
0
fix param typo in vcf annotator

#451 quinnwai closed 2 months ago
0
feat: enable logging in annotator CLI

#450 jsstevenson closed 2 months ago
0
feat!: enhance annotator CLI options

#449 jsstevenson closed 2 months ago
0
docs: update VCF module docstrings

#448 jsstevenson closed 2 months ago
0
feat!: declare annotator CLI as console entrypoint

#447 jsstevenson closed 2 months ago
1
feat!: enhance annotator CLI options

#446 jsstevenson closed 2 months ago
0
feat: optionally suppress console output

#445 jsstevenson closed 2 months ago
0
chore: update VCF annotator type annotations for 3.10-12

#444 jsstevenson closed 2 months ago
0
fix: do not allow `SequenceLocation` to have negative `start`/`end` v…

#443 korikuzma closed 2 months ago
1
SequenceLocation allows for negative start/end coordinates

#442 korikuzma closed 2 months ago
0
sync with root-inheritance-fix from VRS

#441 larrybabb closed 3 months ago
3
`ga4gh_identify` adds `digest` properties in-place regardless of `in_place` argument

#440 jsstevenson opened 4 months ago
1
AlleleTranslator import error

#439 smoudour closed 4 months ago
8
docs: fix alt text for github contributors

#438 korikuzma closed 4 months ago
0
setup a list of unique variant examples for the basis of testing

#437 larrybabb opened 4 months ago
1
cicd: update actions revs

#436 jsstevenson closed 4 months ago
0
fix: revert Pydantic custom serializer

#435 korikuzma closed 4 months ago
6
fix: ensure Entity objects return type as str

#434 korikuzma closed 4 months ago
1
Object types return ENUM instead of ENUM.value

#433 ahwagner closed 4 months ago
2
refactor: remove unused code + small cleanup

#432 korikuzma closed 4 months ago
0
feat: add enum for `as_version` + add restrictions to `ga4gh_serialize_as_version`

#431 korikuzma closed 4 months ago
0
feat!: update/rename classes to refect public API access and ABC

#430 korikuzma closed 4 months ago
0
Update pydantic models to reflect public api access

#429 korikuzma closed 4 months ago
0
fix: f-string in `ga4gh_serialize_as_version`

#428 korikuzma closed 4 months ago
0
feat: VRS 1.3 digests may be computed for Alleles and Sequence Locations

#427 ahwagner closed 4 months ago
5
fix: remove domain models from entity models

#426 korikuzma closed 4 months ago
0
refactor: rename VrsTypes enum to VrsType

#425 korikuzma closed 4 months ago
0
chore!: update vrs/gks-common submodules

#424 korikuzma closed 4 months ago
0
refactor: remove _internal directories

#423 korikuzma closed 4 months ago
0
refactor!: split gks-common module into domain + entity

#422 korikuzma closed 4 months ago
0
refactor: remove _internal directories

#421 korikuzma closed 4 months ago
0
feat: create enum for gks-common + vrs types

#420 korikuzma closed 4 months ago
0
feat: add make command (`nbready`) to create jupyter notebook venv

#419 korikuzma closed 4 months ago
0
build: update SeqRepo collection to 2024-02-20

#418 korikuzma closed 4 months ago
0
feat!: update vrs/common models

#417 korikuzma closed 4 months ago
1