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ga4gh
/
vrs-python
GA4GH Variation Representation Python Implementation
https://github.com/ga4gh/vrs
Apache License 2.0
51
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27
forks
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build!: remove support for python 3.9 and make 3.12 the dev default
#416
korikuzma
closed
5 months ago
0
update to python >= 3.10 and change default to 3.12
#415
korikuzma
closed
5 months ago
0
chore: Pydantic __fields__ -> model_fields
#414
korikuzma
closed
5 months ago
0
feat!: rename core_models to common_models
#413
korikuzma
closed
5 months ago
0
Rename core to common
#412
korikuzma
closed
5 months ago
0
pylint/yapf -> ruff
#411
jsstevenson
opened
5 months ago
0
Implement cat-vrs (?)
#410
theferrit32
closed
5 months ago
3
Implement CisPhasedBlock
#409
theferrit32
closed
4 months ago
1
Do away with "private" modules
#407
jsstevenson
closed
4 months ago
1
docs: update readme (install seqrepo, psql cmd, + submodules)
#406
korikuzma
closed
6 months ago
0
fix: add password to docker-compose.yml for uta service
#405
korikuzma
closed
6 months ago
0
docker compose up failed for uta
#404
korikuzma
closed
6 months ago
0
add make notebooks command
#403
korikuzma
closed
4 months ago
0
Adding the getting_started notebooks and removing the rest.
#402
toneillbroad
closed
7 months ago
1
Only attempt to create allele if values were extracted
#401
ehclark
closed
7 months ago
0
Passing an invalid variant description to AlleleTranslator.translate_from() throws TypeError
#400
ehclark
closed
7 months ago
0
build: update supported python versions
#399
korikuzma
closed
7 months ago
1
Only support 4 most recent python releases
#398
korikuzma
closed
7 months ago
1
Provide way to stop normalization if the expression is obviously problematic (such as deletions in large gap/unknown regions)
#397
larrybabb
opened
7 months ago
5
fix: get `make test` to run
#396
korikuzma
closed
7 months ago
0
`make test` not working
#395
korikuzma
closed
7 months ago
0
refactor: use Annotated with StringConstraints instead of constr
#394
korikuzma
closed
7 months ago
0
refactor: move getting hgvs loc start/end to HgvsTools
#393
korikuzma
closed
7 months ago
1
Move CnvTranslator _from_hgvs to Hgvs Tools
#392
korikuzma
closed
7 months ago
2
feat: update gks-common/vrs model
#391
korikuzma
closed
7 months ago
0
Where and how to define the `data_proxy` interface
#390
jsstevenson
opened
7 months ago
1
Eliminate "extra" dependencies
#389
jsstevenson
opened
7 months ago
5
build: configure build with pyproject.toml
#388
jsstevenson
closed
7 months ago
0
feat: cnv translator supports uncertain ranges for g. and m.
#387
korikuzma
closed
7 months ago
0
Ensure pydantic models are up to date with VRS 2.x schemas
#386
korikuzma
closed
7 months ago
0
docs: updates to vcf_annotator.md
#385
wesleygoar
closed
7 months ago
1
cicd: fix release when multiple branches track same tag
#384
korikuzma
closed
7 months ago
0
feat: add inclusion of "NT" prefixed refseq accessions to hgvs tools
#383
larrybabb
closed
7 months ago
1
Transform variations to previous VRS version
#382
jsstevenson
closed
4 months ago
1
Add hgvs parsing support for `Range` based SequenceLocations
#381
larrybabb
opened
7 months ago
5
Allow hgvs containing `NT` refseq accessions to be parsed
#380
larrybabb
closed
7 months ago
0
chore!: remove localizer
#379
korikuzma
closed
7 months ago
0
README for notebooks
#378
wesleygoar
closed
7 months ago
2
docs: update + reorganize readme
#376
korikuzma
closed
7 months ago
0
refactor: simplify validating reference sequence
#375
korikuzma
closed
7 months ago
0
chore: move VariationNormalizerRESTDataProxy to notebooks
#374
korikuzma
closed
8 months ago
0
chore: remove unused code
#373
korikuzma
closed
8 months ago
0
DataProxy.is_valid_ref_seq() return signature simplificiation
#372
larrybabb
closed
7 months ago
0
chore: remove submodules from package data
#371
korikuzma
closed
8 months ago
0
Move Variation Normalizer Proxy to notebook dir
#370
korikuzma
closed
8 months ago
0
create or replace quick setup readme
#368
theferrit32
closed
7 months ago
1
Remove unused code
#367
korikuzma
closed
8 months ago
0
feat: refactor hgvsTools and support `c.` translation
#366
larrybabb
closed
8 months ago
5
`n.` hgvs expressions are producing same output as `c.` expressions
#365
larrybabb
closed
7 months ago
2
hgvs to vrs is returning valid results when hgvs has `IncorrectReferenceAllele`
#364
larrybabb
opened
8 months ago
2
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