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## Description of Issue
We have struggled in the past 6 months with creating/maintaining test data that is reliable to work with for development purposes. This was especially highlighted in the dono…
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## Describe the bug
Fields which have clinical exception values (ie. `treatment_setting` = `Not applicable`) are reported as errors in the downloaded error report TSV file
## Steps To Reproduce
L…
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## Goal
Set up the Exposure, Comorbidity and Family History cards with the data tables. These files are optional, so only show the card if the donor has had a file submitted.
**Clinical files**: ex…
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## Detailed Description
End goal is to have a ui to show submitted analyses(seq exp) and what wf have been done on these analyses if any
question is does our current gateway api let us query these inf…
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1. Create a function in the httpClient to interact with the ProgramService for the given action.
2. Update the gql resolver to use the httpClient function from step 1 instead of the GRPC client.
**pr…
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@lindaxiang to fill in details
Got a request from Lincoln's group to run Alignment + Sanger pipelines through their data:
- data size is ~30TB for ~30 donors
- each donor has 1 normal + multiple tu…
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Supporting documentation to help users of the ICGC 25K portal find relevant data references after the portal's shutdown later this month.
This will add a page to the ARGO doc's site that can be u…
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- workflow input: variant call result (sanger or mutect2)
- processed by this workflow, detect whether the results are allowed to be open access. The workflow uses the open access BED file to determin…
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- This will need to respect the agreed to schema: https://github.com/icgc-argo/workflow-roadmap/issues/130
- Check EGA for missing RNA data
- Most of the data already in Collab, this needs to be trans…
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## Describe the bug
The `ESAD-UK` project re-named some of their submitted donor and specimen IDs during Release 28 (this was brought to our attention after the Release). We transferred some of the…