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The `qc` subcommand requires an 'auxiliary' folder to exist to work. This folder is intended to be provided by `train`. However, chrombpnet will not allow for this folder to exist due to the usage of …
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Dear Dr. Stein,
I have a set of videos featuring iPSC-derived CMs with EGP-tagged alpha-actinin. Originally, I planned to use these for Sarctrack for analysis, but, as you know it lacks alignment …
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### Background
- Based on the TMoplev spectra, the suspension motion at 200mHz looks large compared to the others.
![ITMY_TM_starting_point_1548JST](https://user-images.githubusercontent.com/3778751…
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Hi!
I think I've found some bug, which makes toss unusable.
I've applied following patch:
```
diff --git a/catch.c b/catch.c
index 6cdd654..e95e5e3 100644
--- a/catch.c
+++ b/catch.c
@@ -111,6…
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`bismark` strips the "@" character from the start of the read name (`QNAME`). The FF-iPSC_19.11+BMP4 and H1+BMP4 samples have a "@" character at the start of all read names but my scripts don't remove…
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**Describe the bug**
> While navigating in ingest-ui, I noticed the fields that are listed as "type": "number" in the schema, are represented by a checkbox in ingest-ui rather than a box to write numb…
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Hi,
I'm using pySCENIC to analyze human iPSC data. We are interested in some genes and have the following questions:
1. We cannot find TBXT in the pySCENIC. Instead, we found T which is another …
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Is there a way to run PePr without specifying input files, as is the case for analyzing ATAC-seq/DNase-seq data?
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**As of 28/02/2022: needs update**
**Ingest:** [KidneyOrganoidsBioprinting](https://contribute.data.humancellatlas.org/projects/detail?uuid=8787c238-89ef-4636-a57d-3167e8b54a80)
**Needs update:**
-…
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editor preferred term: Reprogramming reagents
alternative terms: Cell reprogramming reagents, Reagents for cellular reprogramming
textual definition: Reagents which help activate gene markers to rev…