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Hi,
I am implementing the Omnipath resources for NicheNet analysis on a Windows computer. I was optimizing the parameters for the model as shown below:
```
# Parameter optimization
expression_se…
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I have some questions that came up when going through the PLB:
1. in some datasets, some of the ligands are deposited more than ones, but they have the same name in the .sdf . It would be helpful t…
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Using react-router user shall be able to display single ligand of given target for given site.
url shall be /target/target_name/site/ligand1/ligand2/ligand3
Max length of the url is 2048 character…
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**In broad terms, what are you trying to do?**
For the COVID Moonshot second-generation inhibitor program (and its successor [ASAP](https://www.choderalab.org/news/2021/10/26/asap-avidd-proposal)),…
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_A colleague from the lab made this little sum up of modular transcription based biosensors. It is definitely worth reading and maybe even creating our own version in Portuguese? Why not..._
### Tr…
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Getting some negative Schnet scores @kaminow
```
@pytest.mark.parametrize("use_dask", [True, False])
def test_schnet_scorer(results_multi, use_dask):
scorer = SchnetS…
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Running our protein-prep CLI on a supported target but using a PDB structure file directly from RCSB results in a failure see the following example:
```bash
wget https://files.rcsb.org/download/5SQ…
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Hi,
With some molecules I get (Unimol Docking V2):
/media/christian/VS1/VS/Results_Unimol/MC4R_protein/Poses/Sublibrary_05/CHEMBL-3740791-1.sdf-Cc1ccnc(N(CCC(=O)[O-])C(=O)c2ccc3c(c2)nc(CNc2ccc(C…
CLG68 updated
2 weeks ago
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Doesn't do anything anymore.
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Is there a helper function to draw paired arrow lot with ligands receptors and targets such as this one ideally with mean expression?
![image](https://github.com/Sarah145/CCPlotR/assets/30392707/dddd…