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Hi, guys:
I am wondering if pheweb could display multiple GWAS into a consolidated Manhattan plot, something like this **_topr_** (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12…
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Hi, there:
the topr package is really nice.
I have a lot of GWAS which have columns such as **SNP A1 A2 BETA P**. However, it seems that topr demands the input file to have REF and ALT column …
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The number of exons plotted seems to be dependent on wether the legend is shown or not.
``` r
pacman::p_load(reprex)
pacman::p_load_gh("GenuityScience/topr")
data("R2_CD_UKBB")
# no legend…
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Hi I have an issue while trying to make a regional plot with my own LD vcf file, and the variants seem to have been incorrectly plotted in the bottom-left corner:
`mysumstats.plot_mqq(mode="r", build…
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Hi Tota,
Great package!
I was trying to make a locuszoom style plot of a region where the strongest association signal has pvalues ~1e-400 . Since R can only represent values around ~1e-300 thi…
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Hi,
I am trying to use this great tool to create locuszoom plots. Will you guys provide GRch38 gencode list any soon as an update of the package?
Thank you
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https://mp.weixin.qq.com/s/syIZxkHLOPscSvPUMcvJJg
ixxmu updated
9 months ago
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To draw regional association plot for the lead variant of each replicated loci, we need to update the LocusZoom SQLite database to show the recombination rate and it hotspots in the plot for SNP with …
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Hello,
I am posting this here because I am not sure of the most appropriate contact for this. Please let me know if I should be directing this concern to another source.
I noticed that the Unive…
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`lz-aggregation-tests.min.js` is possible to plot burden test by `raremetal.js`, however it is too slow for big data.
Regenie is good for calculating UKB data for burden test, so is this possible f…