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Cloufield
/
gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
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Liftover returning only column headings
#100
halkelchen
closed
2 weeks ago
2
Inquiry on QC and GWAS Pipeline
#99
buer19970329
opened
2 weeks ago
6
ERROR: Could not build wheels for pySAM, which is required to install pyproject.toml-based projects
#98
FrederickGri
opened
2 weeks ago
7
mysumstats.to_finemapping not working
#97
halkelchen
closed
2 weeks ago
5
Effect Allele select in 2SMR
#96
chide-org
closed
3 weeks ago
4
Question about gwas
#95
Youpu-Chen
opened
1 month ago
1
filter_value filters all data
#94
lbwfff
closed
1 month ago
2
Installation error
#93
bsb2014
closed
1 month ago
10
vcf_path in regional plot
#92
Sheeya-Dong
opened
2 months ago
3
Improve fix for when POS is not on ref_seq
#91
sup3rgiu
closed
2 months ago
1
Issue on QQ plot visualization alone
#90
Youpu-Chen
closed
2 months ago
2
out of memory error in basic_check()
#89
evakoe
opened
2 months ago
4
Index out of bounds error in check_ref()
#88
evakoe
opened
2 months ago
7
ImportError upon installation
#87
zhaiting
closed
2 months ago
8
Add cache to speedup strand inference
#86
sup3rgiu
closed
2 months ago
5
Fix missing logs, rename **args to **kwargs, fix typo
#85
sup3rgiu
closed
3 months ago
1
error when setting anno="GENENAME"
#84
Sheeya-Dong
opened
3 months ago
5
Regional plots with LD
#83
xEmz
opened
3 months ago
1
installation
#82
YijiaWu1
opened
3 months ago
3
Fast implementation to write VCF and CSV
#81
sup3rgiu
closed
3 months ago
1
Vectorize checkref
#80
sup3rgiu
closed
3 months ago
4
Highlighting significant loci in the trumpet plot?
#79
RezaJF
opened
3 months ago
1
scikit-allel build issues
#78
jonathangriffiths
closed
4 months ago
2
python version dependencies
#77
chenyangjjj
closed
3 months ago
1
Regional plot: unable to plot variants correctly.
#76
sakuramodokich
closed
4 months ago
8
rsID Annotation for need to be fixed
#75
chenyangjjj
closed
5 months ago
2
https://ftp.ncbi.nih.gov/snp/latest_release/VCF/GCF_000001405.39.gz not available now
#74
chenyangjjj
closed
5 months ago
1
Filtering based on lookupstatus() and check_af()
#73
swvanderlaan
opened
6 months ago
4
Naming convention mismatches fixed
#72
soumickmj
closed
7 months ago
2
Highlighting significant loci
#71
soumickmj
opened
7 months ago
2
arguments from manhattan don't exist in miami function
#70
igumnov-daniel
opened
7 months ago
4
Bad statistics
#69
biomguler
closed
7 months ago
7
installation issue with 3.4.30 version
#68
chenyangjjj
opened
7 months ago
4
plot_mqq() snpid problem
#67
poemon
opened
7 months ago
1
Typos
#66
gmauro
closed
7 months ago
0
seed error
#65
swvanderlaan
opened
7 months ago
1
Regional plot: AttributeError: 'NoneType' object has no attribute '_get_renderer'"
#64
noeri-mohamed-hoesein
opened
8 months ago
2
rsid_to_chrpos failed
#63
chenyangjjj
closed
8 months ago
2
error while using rsid_to_chrpos
#62
soumickmj
opened
8 months ago
2
Lifting error
#61
soumickmj
opened
8 months ago
1
Error importing table to gl-format
#60
swvanderlaan
opened
8 months ago
2
miami image really huge
#59
swvanderlaan
closed
8 months ago
3
effect size comparison
#58
swvanderlaan
closed
9 months ago
2
Installation problem
#57
bsb2014
closed
9 months ago
2
add extra parameters for pysam.tabix_index()
#56
gmauro
closed
9 months ago
0
VCF export
#55
gmauro
opened
9 months ago
2
issue about mqqplot anno="GENENAME"
#54
hmutanqilong
closed
9 months ago
2
inferring MAF from rsid for specific population
#53
chenyangjjj
closed
9 months ago
2
Resolving Pysam Errors During GWASLab Installation
#52
lphotoimpact
opened
9 months ago
1
Assigning rsID error
#51
lphotoimpact
opened
9 months ago
2
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