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Cloufield
/
gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
GNU General Public License v3.0
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Different highlight lists and colors
#50
swvanderlaan
closed
9 months ago
3
Error with .plot_daf() function
#49
swvanderlaan
closed
10 months ago
3
More ancestries as download option?
#48
swvanderlaan
closed
10 months ago
6
Could not retrieve index file
#47
chenyangjjj
closed
10 months ago
14
coordinate conversion and infer rsid
#46
chenyangjjj
closed
11 months ago
1
Regional plot gene name issue
#45
soumickmj
opened
11 months ago
1
recombination data for hg38 is in the wrong format
#44
edg1983
closed
11 months ago
2
gl.plot_miami : "local variable 'to_annotate5' referenced before assignment"
#43
chenyangjjj
closed
11 months ago
8
Manhattan plotting issue
#42
swvanderlaan
closed
11 months ago
5
Typo in `basic_check()`-log
#41
swvanderlaan
closed
11 months ago
1
Brisbane plotting error regarding 'SNPID'
#40
swvanderlaan
closed
11 months ago
2
regional plot
#39
chenyangjjj
closed
12 months ago
3
Output exceeds the [size limit]
#38
chenyangjjj
closed
1 year ago
2
regional plot
#37
chenyangjjj
closed
1 year ago
2
Miami plot issue
#36
soumickmj
opened
1 year ago
8
Miami plot giving error
#35
soumickmj
closed
1 year ago
0
Problem with expected log P in QQ plots
#34
soumickmj
opened
1 year ago
10
How to save "gwaslab.Sumstats.Sumstats" object into csv/tsv file
#33
chenyangjjj
closed
1 year ago
2
Making scatter plot directly from gl object instead of going from file
#32
michaelofrancis
opened
1 year ago
2
Adding is_q=False to scatterplot introduces 'Edge_color' error
#31
michaelofrancis
opened
1 year ago
2
Save scatter plot
#30
michaelofrancis
opened
1 year ago
3
Regional Plot missing gene data
#29
XaviFar
closed
1 year ago
2
R2 threshold
#28
chenyangjjj
closed
1 year ago
4
Multiple sumstats ( phenotypes), single MQQ plot
#27
soumickmj
opened
1 year ago
3
m="qq" not working
#26
michaelofrancis
closed
1 year ago
2
Miami plot using sumstats
#25
soumickmj
opened
1 year ago
1
Plotting multiple results in one plot
#24
soumickmj
closed
1 year ago
2
Heatmaps and other plots
#23
soumickmj
opened
1 year ago
2
Frequency correlation plot
#22
swvanderlaan
opened
1 year ago
3
Bonferroni correction
#21
soumickmj
opened
1 year ago
3
Annotate suggestive SNPs
#20
XaviFar
closed
1 year ago
3
chrX Manhattan plot issue
#19
michaelofrancis
closed
1 year ago
5
getlead() cannot handle "X" as CHR value
#18
michaelofrancis
closed
1 year ago
2
New issue
#17
Delvalle-beep
opened
1 year ago
1
Miami plot with no annotation throws exception
#16
meredjj
closed
1 year ago
2
Multiple P values
#15
Delvalle-beep
opened
1 year ago
4
Adding support for bcf?
#14
michaelofrancis
opened
1 year ago
1
Typo in "base_pair_location" GWAS-SSF
#13
michaelofrancis
closed
1 year ago
1
More Manhattan plot issues
#12
michaelofrancis
closed
1 year ago
10
Can't get regional plot working when using data in build HG38
#11
h-leonard
opened
1 year ago
1
gl.download_ref(), not clear how to use it
#10
Delvalle-beep
opened
1 year ago
5
Installation problem on Windows
#9
snowformatics
opened
1 year ago
2
Display issues
#8
michaelofrancis
closed
1 year ago
6
How to use log10P values as input for Manhattan plot?
#7
michaelofrancis
closed
1 year ago
2
Get by chromosome
#6
Delvalle-beep
opened
1 year ago
1
SNPID takes value from RSID and this is the cause of many styling errors
#5
Delvalle-beep
opened
1 year ago
2
Save the plot to an image file
#4
hara555555
opened
1 year ago
2
An issue
#3
JiZhao666
opened
1 year ago
3
Matplotlib causes error on import when you first install
#2
michael-denyer
closed
1 year ago
2
About adding highlight label in manhattan plot
#1
hmutanqilong
opened
1 year ago
14
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