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Hello everyone,
I use FlowSOM in cytobank for CyTOF data, I was wondering if anyone have applied FlowSOM to scRNA-seq and compared it with other clustering methods?
Thank you!
EDYAC updated
3 years ago
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Before we start optimizing a bunch of stuff, we should figure out what the current bottlenecks are, both in preprocessing, training, and running the trained SOM.
To do this, I recommend using the …
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The following script crashes:
./regionCounts.sh -RawDataFile ../../Harbour/SamFiles/ -Partitions ../../Harbour/partition.list -Output ../../Harbour/ChIP_TrainingMatrix
./regionCounts.sh: line 2…
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# Issue
Hi. While reverse-dependency checking **matrixStats**, I get an error that `there is no package called ‘uwot’`. This is because some function call of yours rely on some package that has *…
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Hi Helena and team!
I was able to successfully run FlowSOM on the raw data but failed when the fcs files were normalized using CytoNorm. I believe, this error is because of introductions of NAs. H…
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Hello, I have subsetted my data using the filter() function but apparently it cause some problems in the SummarizedExperiment slots because I get the following error:
> Error in validObject(x) : in…
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We need to decide what data we want to collect from each algorithm. I will update this list with things we decide to collect.
- UAV Client
- UAV ID
- People Sent
- Timestamp when people se…