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P&Ds has made a new release and we should therefore rerun the current [chemical probes pipeline](https://github.com/opentargets/evidence_datasource_parsers/blob/master/exploration/chemicalProbes/chemi…
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Hi,
Thanks for the methBERT tool. You mentioned that "We provided independent trained models on each 5mC and 6mA datasets of different motifs and methyltransferases in the ./trained_model fold.", but…
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EC:2.1.1.354 is currently an xref on these two terms:
- histone methyltransferase activity (GO:0042054)
- histone-lysine N-methyltransferase activity (GO:0018024)
These should both be removed bec…
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this looks incorrect for trm9, will follow up...might be multifunctional...
trm9 | | IBA with PTN000317053 , MGI:1914917 , Q96BT7
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I've just been reviewing the branch shown below (with current EC/RHEA xrefs):
```
histone demethylase activity
|__histone demethylase activity (H3-R2 specific)
|__histone demethylase activity (H…
sjm41 updated
2 years ago
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PMID:31913360 and PMID:32637152 describe a U2 snRNA m6A methyltransferase activity for the human and fly METTLL4 proteins, respectively.
Human METTL4 catalyzes Am to m6Am of U2 snRNA, whereas the f…
sjm41 updated
3 years ago
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E.g. http://amigo.geneontology.org/amigo/term/GO:0043770
Goes through a round of redirects and ends up on a login page. What should we do here @monicacecilia?
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Currently we have a gene to transcript mapping in cBioPortal and there is one in Genome Nexus (https://github.com/genome-nexus/genome-nexus-importer/blob/master/data/grch37_ensembl92/export/ensembl_bi…
inodb updated
2 years ago
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This is nicely defined in this InterPro entry:
http://www.ebi.ac.uk/interpro/entry/InterPro/IPR022968/
This entry represents 18S rRNA aminocarboxypropyltransferases Tsr3 and its homologues. Tsr3 fro…
sjm41 updated
3 years ago
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For SPBC2A9.10/Q9Y7L2 7SK RNA methyltransferase
I am picking up a PAINT mapping for
O-methyltransferase activity
so, is RNA 5'-methyltransferase activity
a O-methyltransferase activity?…