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There are some minor issues in the documentation of [Cascaded Tutorial](https://ivadomed.org/en/latest/tutorials/cascaded_architecture.html), description of them is mentioned below:
### Issue 1:
I…
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To evaluate the model I had the idea to predict spinal level from the nerve segmentation and compare it to the value of [Cadotte et al, 2015](https://doi.org/10.3174/ajnr.A4192).
The final goal is t…
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For the nnunet migration, some CLI flags will become useless.
- `-t` is already almost useless and I don't remember why we still require it;
- `-s` will not be necessary anymore because we do not…
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I'm trying to test a model, and I just want to test it on a single image.
I see that we have the following API:
https://github.com/ivadomed/ivadomed/blob/ea01544efc411bda339137de4914b63bb96345b4…
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Some degenerative cervical myelopathy (DCM) patients have T2w/T2*w hyperintense lesions. Similarly to SCI and MS lesions, it would be great to automate their segmentation.
So far, we have available…
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### Motivation for the feature
Provides better compatibility across platforms, and is the more modern way to handle paths/files/suffixes/etc
https://treyhunner.com/2018/12/why-you-should-be-using-…
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### Description
When trying to process sct_run_batch following instructions on sct website, it works, but only for for the sample data. When those instructions are applied to a "real world" dataset…
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The default JSON file output from the model has the `target_suffix` "_seg-manual" (for SC segmentation), which is a problem because it is counter-intuitive.
A solution is to change this field for s…
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This issue summarizes experiments related to `Dataset602_DCMlesionsMultiChannel` (multi-channel model trained using T2w_ax and SC seg as input channels to segment lesions).
`dataset.json`:
```js…
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## Model to test: [model_seg_ms_mp2rage](https://github.com/ivadomed/model_seg_ms_mp2rage)
release: [r20230210](https://github.com/ivadomed/model_seg_ms_mp2rage/releases/tag/r20230210)
Preproce…