ivadomed model-spinal-rootlets issues

ivadomed / model-spinal-rootlets

Deep-learning based segmentation of the spinal nerve rootlets

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Rootlet-informed regsitration to PAM50 template

#78 sandrinebedard opened 3 weeks ago
2
Update folder structure for `r20240523` model

#77 valosekj closed 1 month ago
1
hc-leipzig-7t-mp2rage graphs

#76 KaterinaKrejci231054 opened 1 month ago
0
Merge packing folders

#75 valosekj opened 1 month ago
0
Pediatric rootlets training and analysis

#74 KaterinaKrejci231054 closed 1 month ago
1
Error when running `packaging_lumbar_rootlets/run_inference_single_subject.py`

#73 valosekj closed 1 month ago
8
Add script for cropping lumbar data

#72 valosekj closed 2 months ago
1
Multi-channel vs multi-label rootlets segmentation

#71 valosekj opened 2 months ago
0
nnUNetv2 problem with changing patch_size (hc-leipzig-7t-mp2rage)

#70 KaterinaKrejci231054 closed 1 month ago
4
Artifact in hc-leipzig-7t-mp2rage dataset in C2 level

#69 KaterinaKrejci231054 opened 2 months ago
2
nnUNet renamed `checkpoint_latest.pth` to `checkpoint_final.pth `

#68 valosekj opened 2 months ago
0
Lumbar rootlets - model training on `Draw Tube` labels

#67 valosekj opened 2 months ago
12
Merge `packaging_ventral_rootlets` and `packaging_lumbar_rootlets` folders

#66 valosekj opened 2 months ago
0
Training model on 7T MP2RAGE images

#65 valosekj opened 2 months ago
2
Testing hc-leipzig-7t-mp2rage dataset

#64 KaterinaKrejci231054 closed 1 month ago
1
Testing cervical model on `hc-leipzig-7t-mp2rage` dataset

#63 KaterinaKrejci231054 closed 2 months ago
8
Vertebral levels vs vertebral bodies

#62 valosekj opened 3 months ago
0
Testing cervical model on 7T ME-GRE

#61 valosekj opened 3 months ago
0
Testing cervical model on `dcm-brno` dataset

#60 KaterinaKrejci231054 opened 3 months ago
1
Explore skeletonization filters (or similar approaches) to extract the centerline of nerve rootlets segmentation

#59 jcohenadad opened 3 months ago
3
What is the best 3D Slicer filter to visualize rootlets

#58 jcohenadad opened 3 months ago
0
Try cervical dorsal model on whole spine image

#57 valosekj opened 3 months ago
3
Update README.md with Imaging Neuroscience ref

#56 valosekj closed 3 months ago
0
Add instructions and script on how to use the lumbar rootlets model

#55 valosekj closed 3 months ago
2
Update path to env with nnunet

#54 valosekj opened 3 months ago
0
Pediatric Rootlets

#53 KaterinaKrejci231054 closed 2 months ago
4
Separete dorsal and ventral rootlets

#52 valosekj opened 4 months ago
0
Explore the Two-Phase Approach for the instance segmentation

#51 valosekj opened 4 months ago
0
Fix filename for inference

#50 valosekj closed 4 months ago
1
Filename issues when running nnUNet inference

#49 valosekj closed 4 months ago
0
Lumbar rootlets - first model training

#48 valosekj opened 4 months ago
5
Add instructions and script on how to use the ventral rootlets model

#47 valosekj closed 4 months ago
1
Lumbar rootlets - images and labels have different resolution and dimensions

#46 valosekj closed 2 months ago
6
Try rootlets segmentation on inv2 (MP2RAGE)

#45 valosekj closed 2 months ago
7
Add codebase for PAM50 rootlets

#44 valosekj closed 5 months ago
1
Ventral rootlets - results of fourth segmentation model

#43 LouisThomasLapointe closed 5 months ago
1
Ventral rootlets - summary

#42 valosekj opened 5 months ago
0
Ltl/new datasets

#41 LouisThomasLapointe closed 6 months ago
5
Ventral rootlets - results of third segmentation model

#40 LouisThomasLapointe closed 5 months ago
1
Add a section about rootlets to spinalcordtoolbox.com

#39 valosekj opened 6 months ago
0
Datasets V1 and V2 for training of the ventral model

#38 LouisThomasLapointe closed 6 months ago
4
Ventral rootlets - results of second segmentation model

#37 LouisThomasLapointe closed 5 months ago
2
Ventral rootlets - results of first segmentation model

#36 LouisThomasLapointe closed 5 months ago
3
Update README with SCT v6.2

#35 valosekj closed 7 months ago
1
`README.md`: Add citation info for arxiv preprint

#34 joshuacwnewton closed 7 months ago
1
Push rootlets segmentations

#33 valosekj closed 6 months ago
3
Publish a release containing the latest model

#32 valosekj closed 8 months ago
1
Apply the model to whole `spine-generic multi-subject` dataset

#31 valosekj opened 8 months ago
0
Extend the model for ventral rootlets

#30 valosekj closed 5 months ago
4
Add scripts for inter-resolution variability assessment

#29 valosekj closed 9 months ago
0