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I am interested in the colibactin motif to see whether a mutation is likely be related to colibactin. In the original article, there was a clear notice of what an single base substitution colibactin-m…
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Hello,
Very excited with the Scenicplus package. I am trying to finalise processing of my cistopic objet but I have an issue for the run_pycistarget() step.
Here is the code I run and the outpu…
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Hello,
Your software and tutorial is very helpful and I have been able to use easily, thank you.
However, I am new to motif analysis and have been struggling to interpret the output metrics/sign…
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**Is your feature request related to a problem? Please describe.**
In i-cisTarget (web), we perform motif clustering with STAMP, which can help to reduce redundancy.
**Describe the solution you'd…
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Hi, I am running the Scenic+plus pipeline with Zebra fish and I am getting `Unable to load annotation for custom` warnings when I run `run_pycistarget`
All databases created specifically for Zebra …
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Hi I am having issue while running snpEff for annotating the vcf file.The process is getting killed while running. What might be causing the issue?
Please see the error mentioned below
```
java…
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I have tried to install celloracle
`conda create -n celloracle_env python=3.8
conda activate celloracle_env`
`conda install -c bioconda pybedtools`
The installation was successful, however, when …
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Currently, we can perform motif enrichment analysis for 200bp flanking regions of the differentially spliced exons. Let us create an option so that we can specify the length of the target regions as w…
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Good afternoon! I have been sporadically tinkering with my GRN analysis for some time, and I am running into various problems. For starters, the number of unique target genes detected by Pando is less…
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Dear @nledru,
First I would like to thank you for your great work, RENIN seems to be a very interesting tool to predict more accurately CREs !
I'm currenlty looking foward to test it and I was …