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As an idea for a dataset with a "story", we could use mapping of diseases in dog breeds, which can be done with a simple filtering for fixed mutations in the disease group (kind of like a very simple …
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I'm butchering breseq's intended use case and identifying gene mutants that arose during high throughput gene variant synthesis and tracking their abundance over a short, selective time course (< 48 h…
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**Is your feature request related to a problem? Please describe.**
My use case is; a cron job that trains on a git repo. I'm using git commit loader rather than file loader (not entirely sure if this…
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| Q | A
| ---------------- | -----
| Bug report? | no
| Feature request? | yes
| BC Break report? | no
| RFC? | no
| Version/Branch | dev-master
Currently yo…
akomm updated
4 years ago
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As discussed with @d0choa and @DSuveges, there is an issue with the target prioritisation engine at least for ClinVar and UniProt where some terms are synonymous with ancestor terms rather than exclus…
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Some mutations appear to be mapped incorrectly to the isoforms.
Example:
I investigated mutations in FGFR1 in the curated, non-redundant dataset.
![image](https://user-images.githubusercontent.…
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Hello,
I am new to the online Galaxy interface. I am following your tutorial on variant calling for arabidopsis thaliana and the MimodD did not want to run. It gave me this error message. Can you h…
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*Installation details*
Two node cluster:
Seed node scylla version 666.development-0.20170729.e624031
New node scylla version 666.development-0.20171112.f8af4f5
Both nodes CentOS 7.4 running on Azu…
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One suggestion from Russ CD is to re-root on WH1, since i use that as a reference for the alignments. This would make mapping mutations more sensible looking.
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I have an issue with successfully running the genebe commandline tool.
**input command:**
`genebe annotate --input 24072-01-01_split.vcf --output 24072-01-01_split_genebe.vcf --progress`
**erro…