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In looking for miRNAs in AmiGO it struck me that we seem to have only Dmel and Atal:
The reason for this is that annotations from RNAC are all uniformly typed with 'ncRNA'
```
RNAcentral URS0…
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Thanks for a great easy to use tool. I've finally reached the step where I would like to do a Gene Centric Noncoding conditional analysis on some select rare variants I identified in my data set.
As…
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Ensembl datasets: from the old Ensembl releases (< 43) -for which no GTF is available- parse GenBank files to retrieve gene/transcripts/exons information and store the annotations in GTF format.
Data…
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- [ ] literature search for compensatory mutations in mouse and human for RRIs
- [ ] find RRIs for lncRNAs to test specific model for ncRNAs
- [ ] look at Benchmark data for examples
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https://github.com/casbap/ncRNA/blob/4d63b3c93f94edc63ecea2a35694447a7bd2d0ad/HumanDataPrep.Rmd#L304
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【考虑到大多数研究人员更喜欢使用 transformers 和 pytorch 作为后端。因此,我将我的工作转移到 transformers 并从头开始训练 pytorch 模型。新模型使用更强大的设置进行训练:现在最大模型长度高达 2048,预训练数据集是 rnacentral 的最新版本,经过长度过滤(
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There are several ncRNA terms that refer to specific RNA families and mirror the [Rfam](https://rfam.org) RNA family classification, for example:
- [OxyS_RNA](http://sequenceontology.org/browser/cu…
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Hello, I would like to ask, what are the differences between the individual analysis in the STAARpipeline (analysis centered on a single locus variable) and the traditional GWAS analysis using the pli…
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I'm going to try looking into this, but in the meantime though I'd report it. Here's the output from my test run after following the documentation.
$ nextflow run companion -profile docker
N E X …
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
-- | -- | -- | -- | -- | -- | --
intron/spliceosom…